The University of Queensland

Profiling of lung SARS-CoV-2 and influenza virus infection dissects virus-specific host responses and gene signatures

Kulasinghe, Arutha, Tan, Chin Wee, dos Santos Miggiolaro, Anna Flavia Ribeiro, Monkman, James, SadeghiRad, Habib, Bhuva, Dharmesh D., da Silva Motta Junior, Jarbas, Vaz de Paula, Caroline Busatta, Nagashima, Seigo, Baena, Cristina Pellegrino, Souza-Fonseca-Guimaraes, Paulo, de Noronha, Lucia, McCulloch, Timothy, Rodrigues Rossi, Gustavo, Cooper, Caroline, Tang, Benjamin, Short, Kirsty R., Davis, Melissa J., Souza-Fonseca-Guimaraes, Fernando, Belz, Gabrielle T. and O'Byrne, Ken (2022). Profiling of lung SARS-CoV-2 and influenza virus infection dissects virus-specific host responses and gene signatures. European Respiratory Journal, 59 (6) 2101881, 1-19. doi: 10.1183/13993003.01881-2021

Circulating tumour cell isolation and molecular profiling; potential therapeutic intervention

Radfar, Payar, Es, Hamidreza Aboulkheyr, Kulasinghe, Arutha, Thiery, Jean Paul and Warkiani, Majid Ebrahimi (2023). Circulating tumour cell isolation and molecular profiling; potential therapeutic intervention. Circulating tumor cells. (pp. 359-385) edited by Richard J. Cote and Evi Lianidou. Cham, Switzerland: Springer. doi: 10.1007/978-3-031-22903-9_14

Exosomes in cancer

Müller Bark, Juliana, Kulasinghe, Arutha, Amenábar, José Miguel and Punyadeera, Chamindie (2021). Exosomes in cancer. Advances in Clinical Chemistry. (pp. 1-40) edited by Gregory S Makowski. San Diego, CA, United States: Academic Press. doi: 10.1016/bs.acc.2020.06.006

Application of microfluidic technology in cancer research and therapy

Azadi, Shohreh, Aboulkheyr Es, Hamidreza, Kulasinghe, Arutha, Bordhan, Pritam and Ebrahimi Warkiani, Majid (2020). Application of microfluidic technology in cancer research and therapy. Advances in Clinical Chemistry. (pp. 193-235) edited by Gregory S. Makowski. Cambridge, MA, United States: Academic Press. doi: 10.1016/bs.acc.2020.02.012

The isolation and characterization of circulating tumor cells from head and neck cancer patient blood samples using spiral microfluidic technology

Kulasinghe, Arutha, Warkiani, Majid Ebrahimi and Punyadeera, Chamindie (2019). The isolation and characterization of circulating tumor cells from head and neck cancer patient blood samples using spiral microfluidic technology. Methods in Molecular Biology. (pp. 129-136) New York, NY, United States: Humana Press. doi: 10.1007/978-1-4939-9769-5_8

Circulating tumor cells: isolation, expansion, characterization and translation to clinic

Kulasinghe, Arutha, Schmidt, Henri and Punyadeera, Chamindie (2016). Circulating tumor cells: isolation, expansion, characterization and translation to clinic. Circulating tumor cells (CTCs): detection methods, health impact and emerging clinical challenges. (pp. 1-18) edited by Paresh Chandra Ray. New York, NY United States: Nova Science Publishers, Inc..

Current trends and management in head and neck cancers

Kulasinghe, Arutha, Lim, Yenkai, Perry, Chris F. L. and Punyadeera, Chamindie (2015). Current trends and management in head and neck cancers. Head and neck cancer: epidemiology, management, and treatment outcomes. (pp. 41-74) edited by Madison R. Hall. New York, NY United States: Nova Science Publishers.

Saliva diagnostics for oral diseases

Zhang, Xi, Kulasinghe, Arutha, Karim, Rafid Shahriyar and Punyadeera, Chamindie (2015). Saliva diagnostics for oral diseases. Advances in salivary diagnostics. (pp. 131-156) edited by Charles F. Streckfus. Berlin, Germany: Springer Berlin Heidelberg. doi: 10.1007/978-3-662-45399-5_7

In situ characterization of the tumor microenvironment

Sadeghirad, Habib, Yaghoubi Naei, Vahid, O’Byrne, Ken, Warkiani, Majid E and Kulasinghe, Arutha (2024). In situ characterization of the tumor microenvironment. Current Opinion in Biotechnology, 86 103083, 103083. doi: 10.1016/j.copbio.2024.103083

Abstract 1141: Spatial-specific gene signatures to predict immunotherapy outcomes in lung cancer

Aung, Thazin N., Moutafi, Myrto, Trontzas, Ioannis, Kulasinghe, Arutha, Monkman, James, Gavrielatou, Niki, Vathiotis, Ioannis, Warrell, Jonathan H. and Rimm, David L. (2024). Abstract 1141: Spatial-specific gene signatures to predict immunotherapy outcomes in lung cancer. Cancer Research, 84 (6_Supplement), 1141-1141. doi: 10.1158/1538-7445.am2024-1141

Abstract 1154: Spatial profiling of the tumor microenvironment in head and neck squamous cell carcinoma revealed immune cell type infiltration into the TME as a predictor of immunotherapy response

Sadeghirad, Habib, Tan, Chin Wee, Liu, Ning, Monkman, James, Cooper, Caroline, O’Byrne, Ken, Davis, Melissa, Hughes, Brett and Kulasinghe, Arutha (2024). Abstract 1154: Spatial profiling of the tumor microenvironment in head and neck squamous cell carcinoma revealed immune cell type infiltration into the TME as a predictor of immunotherapy response. Cancer Research, 84 (6_Supplement), 1154-1154. doi: 10.1158/1538-7445.am2024-1154

Abstract 1158: Spatially resolved cell profiling unveils tumor metabolic states associated with immunotherapy response in NSCLC

Monkman, James, Czertok, Rotem, Bookstein, Shai, Arbiv, Becky, Shachaf, Yuval, Elran, Ron, Bloom, Kenneth, Puig, Oscar, O'Byrne, Ken, Markovits, Ettai and Kulasinghe, Arutha (2024). Abstract 1158: Spatially resolved cell profiling unveils tumor metabolic states associated with immunotherapy response in NSCLC. Cancer Research, 84 (6_Supplement), 1158-1158. doi: 10.1158/1538-7445.am2024-1158

Abstract 1525: Integration of high-plex tumor-Immune phenotyping and checkpoint interactions for deeper spatial characterization of human cancer tissues

Bodbin, Sara, Ma, Ning, Pratapa, Aditya, Nikulina, Nadya, Monkman, James, Jhaveri, Niyati, Elofsson, Hampus, Basu, Subham, Zieba-Wicher, Agata and Kulasinghe, Arutha (2024). Abstract 1525: Integration of high-plex tumor-Immune phenotyping and checkpoint interactions for deeper spatial characterization of human cancer tissues. Cancer Research, 84 (6_Supplement), 1525-1525. doi: 10.1158/1538-7445.am2024-1525

Abstract 5188: Defining PD-1/PD-L1 receptor-ligand interactions in the head and neck cancer tumor microenvironment identifies unique ‘immune cell rivers’ of cellular interactions

Sadeghirad, Habib, Naei, Vahid Yaghoubi, Monkman, James, Basu, Subham, Wicher, Agata, Ladwa, Rahul, Hughes, Brett GM and Kulasinghe, Arutha (2024). Abstract 5188: Defining PD-1/PD-L1 receptor-ligand interactions in the head and neck cancer tumor microenvironment identifies unique ‘immune cell rivers’ of cellular interactions. Cancer Research, 84 (6_Supplement), 5188-5188. doi: 10.1158/1538-7445.am2024-5188

Abstract 5503: Ultrahigh-plex spatial phenotyping of head and neck cancer tissue uncovers multiomic signatures of immunotherapy response

Pratapa, Aditya, Hernandez, Lydia, Cheikh, Bassem Ben, Jhaveri, Niyati and Kulasinghe, Arutha (2024). Abstract 5503: Ultrahigh-plex spatial phenotyping of head and neck cancer tissue uncovers multiomic signatures of immunotherapy response. Cancer Research, 84 (6_Supplement), 5503-5503. doi: 10.1158/1538-7445.am2024-5503

Abstract 6872: A spatio-temporal approach to mapping the dynamics of cutaneous squamous cell carcinoma progression and immunotherapy response: A journey through TiME

Jhaveri, Niyati, Ben Cheikh, Bassem, Klymyshyn, Dmytro, Ma, Ning, Pratapa, Aditya, Monkman, James, Nelson, Nadine and Kulasinghe, Arutha (2024). Abstract 6872: A spatio-temporal approach to mapping the dynamics of cutaneous squamous cell carcinoma progression and immunotherapy response: A journey through TiME. Cancer Research, 84 (6_Supplement), 6872-6872. doi: 10.1158/1538-7445.am2024-6872

Abstract 73: Spatial profiling of pediatric rhabdomyosarcoma to elucidate their immunosuppressive tumor microenvironment

Tu, Cui, Tan, Chin Wee, Liu, Ning, Kulasinghe, Arutha and Souza-Fonseca-Guimaraes, Fernando (2024). Abstract 73: Spatial profiling of pediatric rhabdomyosarcoma to elucidate their immunosuppressive tumor microenvironment. Cancer Research, 84 (6_Supplement), 73-73. doi: 10.1158/1538-7445.am2024-73

Spatial insights into immunotherapy response in non-small cell lung cancer (NSCLC) by multiplexed tissue imaging

Monkman, James, Moradi, Afshin, Yunis, Joseph, Ivison, Geoff, Mayer, Aaron, Ladwa, Rahul, O’Byrne, Ken and Kulasinghe, Arutha (2024). Spatial insights into immunotherapy response in non-small cell lung cancer (NSCLC) by multiplexed tissue imaging. Journal of Translational Medicine, 22 (1) 239. doi: 10.1186/s12967-024-05035-8

In situ single-cell profiling sheds light on IFI27 localisation during SARS-CoV-2 infection

Tan, Chin Wee, Chen, Jinjin, Liu, Ning, Bhuva, Dharmesh D., Blick, Tony, Monkman, James, Cooper, Caroline, Kharbanda, Malvika, Feher, Kristen, Phipson, Belinda, Killingbeck, Emily E., Pan, Liuliu, Kim, Youngmi, Liang, Yan, Nam, Andy, Leon, Michael, Souza-Fonseca-Guimaraes, Paulo, Nagashima, Seigo, Camargo Martins, Ana Paula, Machado-Souza, Cleber, de Noronha, Lucia, Tang, Benjamin, Short, Kirsty, Fraser, John, Belz, Gabrielle T., Souza-Fonseca-Guimaraes, Fernando, Kulasinghe, Arutha and Davis, Melissa J. (2024). In situ single-cell profiling sheds light on IFI27 localisation during SARS-CoV-2 infection. eBioMedicine, 101 105016, 105016. doi: 10.1016/j.ebiom.2024.105016

Sounding an Alarm over Spatial Biology : Scientists from across the globe highlight spatial biology's triumphs and legal trials while issuing an urgent call for antitrust action

Orr, Miranda E., Kulasinghe, Arutha, Kolar, Grant R., Heyn, Holger, Plummer, Jasmine, Kristensen, Lasse Sommer, Kjems, Jorgen, Mills, Gordon, Garcia-Vallejo, Juan J., Nijman, I.J., West, Nicholas P. and Cox, Amanda (2024). Sounding an Alarm over Spatial Biology : Scientists from across the globe highlight spatial biology's triumphs and legal trials while issuing an urgent call for antitrust action. Genetic Engineering & Biotechnology News, 44 (3), 16-17. doi: 10.1089/gen.44.03.07

Poor patient outcome correlates with active engulfment of cytokeratin positive CTCs within cancer-associated monocyte population in lung cancer

Wiegmans, A. P., Ivanova, E., Naei, V. Y., Monkman, J., Fletcher, J., Mullally, W., Warkiani, M. E., O’Byrne, K. and Kulasinghe, A. (2024). Poor patient outcome correlates with active engulfment of cytokeratin positive CTCs within cancer-associated monocyte population in lung cancer. Clinical & Experimental Metastasis, 1-10. doi: 10.1007/s10585-024-10270-w

The in situ transcriptomic landscape of breast tumour-associated and normal adjacent endothelial cells

Ravichandran, Akhilandeshwari, Monkman, James, Mehdi, Ahmed M., Blick, Tony, Snell, Cameron, Kulasinghe, Arutha and Bray, Laura J. (2024). The in situ transcriptomic landscape of breast tumour-associated and normal adjacent endothelial cells. Biochimica et Biophysica Acta (BBA) - Molecular Basis of Disease, 1870 (2) 166985, 166985. doi: 10.1016/j.bbadis.2023.166985

Tissue biomarkers of immune checkpoint inhibitor therapy

Davoudi, Fatemeh, Moradi, Afshin, Sadeghirad, Habib and Kulasinghe, Arutha (2024). Tissue biomarkers of immune checkpoint inhibitor therapy. Immunology & Cell Biology. doi: 10.1111/imcb.12723

Inhibition of Aurora B kinase (AURKB) enhances the effectiveness of 5-fluorouracil chemotherapy against colorectal cancer cells

Shah, Esha T., Molloy, Christopher, Gough, Madeline, Kryza, Thomas, Samuel, Selwin G., Tucker, Amos, Bhatia, Maneet, Ferguson, Genevieve, Heyman, Rebecca, Vora, Shivam, Monkman, James, Bolderson, Emma, Kulasinghe, Arutha, He, Yaowu, Gabrielli, Brian, Hooper, John D., Richard, Derek J., O’Byrne, Kenneth J. and Adams, Mark N. (2024). Inhibition of Aurora B kinase (AURKB) enhances the effectiveness of 5-fluorouracil chemotherapy against colorectal cancer cells. British Journal of Cancer. doi: 10.1038/s41416-024-02584-z

Leveraging spatial omics for the development of precision sarcoma treatments

Tu, Cui, Kulasinghe, Arutha, Barbour, Andrew and Souza-Fonseca-Guimaraes, Fernando (2024). Leveraging spatial omics for the development of precision sarcoma treatments. Trends in Pharmacological Sciences, 45 (2), 134-144. doi: 10.1016/j.tips.2023.12.006

Whole transcriptome profiling of placental pathobiology in SARS‐CoV‐2 pregnancies identifies placental dysfunction signatures

Stylianou, Nataly, Sebina, Ismail, Matigian, Nicholas, Monkman, James, Doehler, Hadeel, Röhl, Joan, Allenby, Mark, Nam, Andy, Pan, Liuliu, Rockstroh, Anja, Sadeghirad, Habib, Chung, Kimberly, Sobanski, Thais, O'Byrne, Ken, Almeida, Ana Clara Simoes Florido, Rebutini, Patricia Zadorosnei, Machado‐Souza, Cleber, Stonoga, Emanuele Therezinha Schueda, Warkiani, Majid E, Salomon, Carlos, Short, Kirsty, McClements, Lana, de Noronha, Lucia, Huang, Ruby, Belz, Gabrielle T, Souza‐Fonseca‐Guimaraes, Fernando, Clifton, Vicki and Kulasinghe, Arutha (2024). Whole transcriptome profiling of placental pathobiology in SARS‐CoV‐2 pregnancies identifies placental dysfunction signatures. Clinical & Translational Immunology, 13 (2) e1488, e1488. doi: 10.1002/cti2.1488

Metabolomics at the tumor microenvironment interface: Decoding cellular conversations

Berrell, Naomi, Sadeghirad, Habib, Blick, Tony, Bidgood, Charles, Leggatt, Graham R., O'Byrne, Ken and Kulasinghe, Arutha (2023). Metabolomics at the tumor microenvironment interface: Decoding cellular conversations. Medicinal Research Reviews. doi: 10.1002/med.22010

standR: spatial transcriptomic analysis for GeoMx DSP data

Liu, Ning, Bhuva, Dharmesh D, Mohamed, Ahmed, Bokelund, Micah, Kulasinghe, Arutha, Tan, Chin Wee and Davis, Melissa J (2023). standR: spatial transcriptomic analysis for GeoMx DSP data. Nucleic Acids Research, 52 (1) e2, e2-e2. doi: 10.1093/nar/gkad1026

MA09.03 High-dimensional profiling of the tumour microenvironment of non-small cell lung cancer

Kulasinghe, A., Monkman, J., Moradi, A., Yunis, J., Ivison, G., Mayer, A. and O'Byrne, K. (2023). MA09.03 High-dimensional profiling of the tumour microenvironment of non-small cell lung cancer. Journal of Thoracic Oncology, 18 (11), S129-s129. doi: 10.1016/j.jtho.2023.09.173

Genomic communication via circulating extracellular vesicles and long-term health consequences of COVID-19

Nair, Soumyalekshmi, Nova-Lamperti, Estefania, Labarca, Gonzalo, Kulasinghe, Arutha, Short, Kirsty R., Carrión, Flavio and Salomon, Carlos (2023). Genomic communication via circulating extracellular vesicles and long-term health consequences of COVID-19. Journal of Translational Medicine, 21 (1) 709, 1-19. doi: 10.1186/s12967-023-04552-2

1144P High-plex spatial profiling of cutaneous squamous cell carcinoma to identify biomarkers associated with clinical outcomes: The cMIC study

Ladwa, R., Monkman, J., Sadeghirad, H., Cooper, C., Belz, G., Bowman, J., Schaider, H., Liu, H., Kulasinghe, A. and Porceddu, S. (2023). 1144P High-plex spatial profiling of cutaneous squamous cell carcinoma to identify biomarkers associated with clinical outcomes: The cMIC study. Annals of Oncology, 34, S685. doi: 10.1016/j.annonc.2023.09.2278

2323P Multi-omic spatial phenotyping of the NSCLC tumour microenvironment for the development of a spatial score associated with immunotherapy resistance

Kulasinghe, A., Ma, N., Pratapa, A., Monkman, J., Braubach, O. and O'Byrne, K.J. (2023). 2323P Multi-omic spatial phenotyping of the NSCLC tumour microenvironment for the development of a spatial score associated with immunotherapy resistance. Annals of Oncology, 34, S1187. doi: 10.1016/j.annonc.2023.09.1352

Mapping the Spatial Proteome of Head and Neck Tumors: Key Immune Mediators and Metabolic Determinants in the Tumor Microenvironment

Jhaveri, Niyati, Ben Cheikh, Bassem, Nikulina, Nadezhda, Ma, Ning, Klymyshyn, Dmytro, DeRosa, James, Mihani, Ritu, Pratapa, Aditya, Kassim, Yasmin, Bommakanti, Sidharth, Shang, Olive, Berry, Shannon, Ihley, Nicholas, McLane, Michael, He, Yan, Zheng, Yi, Monkman, James, Cooper, Caroline, O'Byrne, Ken, Anand, Bhaskar, Prater, Michael, Basu, Subham, Hughes, Brett G.M., Kulasinghe, Arutha and Braubach, Oliver (2023). Mapping the Spatial Proteome of Head and Neck Tumors: Key Immune Mediators and Metabolic Determinants in the Tumor Microenvironment. GEN Biotechnology, 2 (5), 418-434. doi: 10.1089/genbio.2023.0029

Advances in novel strategies for isolation, characterization, and analysis of CTCs and ctDNA

Yaghoubi Naei, Vahid, Bordhan, Pritam, Mirakhorli, Fatemeh, Khorrami, Motahare, Shrestha, Jesus, Nazari, Hojjatollah, Kulasinghe, Arutha and Ebrahimi Warkiani, Majid (2023). Advances in novel strategies for isolation, characterization, and analysis of CTCs and ctDNA. Therapeutic Advances in Medical Oncology, 15 ARTN 17588359231192401, 1-40. doi: 10.1177/17588359231192401

A robust platform for integrative spatial multi‐omics analysis to map immune responses to SARS‐CoV‐2 infection in lung tissues

Tan, Xiao, Grice, Laura F., Tran, Minh, Mulay, Onkar, Monkman, James, Blick, Tony, Vo, Tuan, Almeida, Ana Clara, da Silva Motta, Jarbas, Fernandes de Moura, Karen, Machado‐Souza, Cleber, Souza‐Fonseca‐Guimaraes, Paulo, Baena, Cristina Pellegrino, de Noronha, Lucia, Guimaraes, Fernanda Simoes Fortes, Luu, Hung N., Drennon, Tingsheng, Williams, Stephen, Stern, Jacob, Uytingco, Cedric, Pan, Liuliu, Nam, Andy, Cooper, Caroline, Short, Kirsty, Belz, Gabrielle T., Souza‐Fonseca‐Guimaraes, Fernando, Kulasinghe, Arutha and Nguyen, Quan (2023). A robust platform for integrative spatial multi‐omics analysis to map immune responses to SARS‐CoV‐2 infection in lung tissues. Immunology, 170 (3), 401-418. doi: 10.1111/imm.13679

The seductive allure of spatial biology: accelerating new discoveries in the life sciences

Kulasinghe, Arutha, Wood, Fiona and Belz, Gabrielle (2023). The seductive allure of spatial biology: accelerating new discoveries in the life sciences. Immunology & Cell Biology, 101 (9), 798-804. doi: 10.1111/imcb.12669

Multi‐omic and spatial dissection of immunotherapy response groups in non‐small cell lung cancer

Monkman, James, Kim, Honesty, Mayer, Aaron, Mehdi, Ahmed, Matigian, Nicholas, Cumberbatch, Marie, Bhagat, Milan, Ladwa, Rahul, Mueller, Scott N., Adams, Mark N., O'Byrne, Ken and Kulasinghe, Arutha (2023). Multi‐omic and spatial dissection of immunotherapy response groups in non‐small cell lung cancer. Immunology, 169 (4), 487-502. doi: 10.1111/imm.13646

Mapping immunotherapy sensitivity with multiomic approaches

Kulasinghe, Arutha (2023). Mapping immunotherapy sensitivity with multiomic approaches. Immuno Oncology Insights, 04 (06), 235-237. doi: 10.18609/ioi.2023.031

Liquid biopsy snapshots of key phosphoproteomic pathways in lung cancer patients for diagnosis and therapy monitoring

Ahmed, Mostak, Wuethrich, Alain, Constantin, Nicolas, Shanmugasundaram, Karthik Balaji, Mainwaring, Paul, Kulasinghe, Arutha, O’Leary, Connor, O’Byrne, Ken, Sina, Abu Ali Ibn, Carrascosa, Laura G. and Trau, Matt (2023). Liquid biopsy snapshots of key phosphoproteomic pathways in lung cancer patients for diagnosis and therapy monitoring. Analytical Chemistry, 95 (22), 8522-8532. doi: 10.1021/acs.analchem.3c00519

Spatial phenotyping of cytokine signatures reflecting the immunotherapy responses in head and neck cancer

Ji, HaYeun, Jhaveri, Niyati, Pratapa, Aditya, Ma, Ning, Ben Cheikh, Bassem, Monkman, James, O’Byrne, Ken, Hughes, Brett, Kulasinghe, Arutha and Braubach, Oliver (2023). Spatial phenotyping of cytokine signatures reflecting the immunotherapy responses in head and neck cancer. The Journal of Immunology, 210 (1_Supplement), 171.09-171.09. doi: 10.4049/jimmunol.210.supp.171.09

Compartmentalized spatial profiling of the tumor microenvironment in head and neck squamous cell carcinoma identifies immune checkpoint molecules and tumor necrosis factor receptor superfamily members as biomarkers of response to immunotherapy

Sadeghirad, Habib, Liu, Ning, Monkman, James, Ma, Ning, Cheikh, Bassem Ben, Jhaveri, Niyati, Tan, Chin Wee, Warkiani, Majid Ebrahimi, Adams, Mark N., Nguyen, Quan, Ladwa, Rahul, Braubach, Oliver, O’Byrne, Ken, Davis, Melissa, Hughes, Brett G. M. and Kulasinghe, Arutha (2023). Compartmentalized spatial profiling of the tumor microenvironment in head and neck squamous cell carcinoma identifies immune checkpoint molecules and tumor necrosis factor receptor superfamily members as biomarkers of response to immunotherapy. Frontiers in Immunology, 14 1135489, 1-16. doi: 10.3389/fimmu.2023.1135489

Blood transcriptome responses in patients correlate with severity of COVID-19 disease

Wang, Ya, Schughart, Klaus, Pelaia, Tiana Maria, Chew, Tracy, Kim, Karan, Karvunidis, Thomas, Knippenberg, Ben, Teoh, Sally, Phu, Amy L., Short, Kirsty R., Iredell, Jonathan, Thevarajan, Irani, Audsley, Jennifer, Macdonald, Stephen, Burcham, Jonathon, McLean, Anthony, Tang, Benjamin, Shojaei, Maryam, PREDICT-19 consortium, Kulasinghe, Arutha and Carney, Meagan E. (2023). Blood transcriptome responses in patients correlate with severity of COVID-19 disease. Frontiers in Immunology, 13 1043219, 1-18. doi: 10.3389/fimmu.2022.1043219

IFI27 transcription is an early predictor for COVID-19 outcomes, a multi-cohort observational study

Shojaei, Maryam, Shamshirian, Amir, Monkman, James, Grice, Laura, Tran, Minh, Tan, Chin Wee, Teo, Siok Min, Rodrigues Rossi, Gustavo, McCulloch, Timothy R., Nalos, Marek, Raei, Maedeh, Razavi, Alireza, Ghasemian, Roya, Gheibi, Mobina, Roozbeh, Fatemeh, Sly, Peter D., Spann, Kirsten M., Chew, Keng Yih, Zhu, Yanshan, Xia, Yao, Wells, Timothy J., Senegaglia, Alexandra Cristina, Kuniyoshi, Carmen Lúcia, Franck, Claudio Luciano, dos Santos, Anna Flavia Ribeiro, Noronha, Lucia de, Motamen, Sepideh, Valadan, Reza, Amjadi, Omolbanin ... Tang, Benjamin (2023). IFI27 transcription is an early predictor for COVID-19 outcomes, a multi-cohort observational study. Frontiers in Immunology, 13 1060438, 1-14. doi: 10.3389/fimmu.2022.1060438

Transcriptomic profiling of cardiac tissues from SARS‐CoV ‐2 patients identifies DNA damage

Kulasinghe, Arutha, Liu, Ning, Tan, Chin Wee, Monkman, James, Sinclair, Jane E., Bhuva, Dharmesh D., Godbolt, David, Pan, Liuliu, Nam, Andy, Sadeghirad, Habib, Sato, Kei, Bassi, Gianluigi Li, O'Byrne, Ken, Hartmann, Camila, Miggiolaro, Anna Flavia Ribeiro dos Santos, Marques, Gustavo Lenci, Moura, Lidia Zytynski, Richard, Derek, Adams, Mark, Noronha, Lucia de, Baena, Cristina Pellegrino, Suen, Jacky Y., Arora, Rakesh, Belz, Gabrielle T., Short, Kirsty R., Davis, Melissa J., Souza‐Fonseca Guimaraes, Fernando and Fraser, John F. (2022). Transcriptomic profiling of cardiac tissues from SARS‐CoV ‐2 patients identifies DNA damage. Immunology, 168 (3), 403-419. doi: 10.1111/imm.13577

Single-cell analysis of circulating tumour cells: enabling technologies and clinical applications

Radfar, Payar, Aboulkheyr Es, Hamidreza, Salomon, Rob, Kulasinghe, Arutha, Ramalingam, Naveen, Sarafraz-Yazdi, Ehsan, Thiery, Jean Paul and Warkiani, Majid Ebrahimi (2022). Single-cell analysis of circulating tumour cells: enabling technologies and clinical applications. Trends in Biotechnology, 40 (9), 1041-1060. doi: 10.1016/j.tibtech.2022.02.004

Immunotherapeutic targets in non‐small cell lung cancer

Sadeghi Rad, Habib, Bahrami, Tayyeb, Layeghi, Sepideh Mehrpour, Yousefi, Hassan, Rezaei, Meysam, Hosseini‐Fard, Seyed Reza, Radfar, Payar, Warkiani, Majid Ebrahimi, O’Byrne, Ken and Kulasinghe, Arutha (2022). Immunotherapeutic targets in non‐small cell lung cancer. Immunology, 168 (2), 1-17. doi: 10.1111/imm.13562

A robust experimental and computational analysis framework at multiple resolutions, modalities and coverages

Tran, M., Yoon, S., Teoh, M., Andersen, S., Lam, PY., Purdue, B. W., Raghubar, A., Hanson, S.J., Devitt, K., Jones, K., Walters, S., Monkman, J., Kulasinghe, A., Tuong, Z.K., Soyer, H.P., Frazer, I. H. and Nguyen, Q. (2022). A robust experimental and computational analysis framework at multiple resolutions, modalities and coverages. Frontiers in Immunology, 13 911873, 911873. doi: 10.3389/fimmu.2022.911873

Dissecting Tissue Compartment-Specific Protein Signatures in Primary and Metastatic Oropharyngeal Squamous Cell Carcinomas

Sadeghirad, Habib, Monkman, James, Mehdi, Ahmed M., Ladwa, Rahul, O’Byrne, Ken, Hughes, Brett G. M. and Kulasinghe, Arutha (2022). Dissecting Tissue Compartment-Specific Protein Signatures in Primary and Metastatic Oropharyngeal Squamous Cell Carcinomas. Frontiers in Immunology, 13 895513, 1-11. doi: 10.3389/fimmu.2022.895513

Immune checkpoint inhibitors in cancer therapy

Shiravand, Yavar, Khodadadi, Faezeh, Kashani, Seyyed Mohammad Amin, Hosseini-Fard, Seyed Reza, Hosseini, Shadi, Sadeghirad, Habib, Ladwa, Rahul, O’Byrne, Ken and Kulasinghe, Arutha (2022). Immune checkpoint inhibitors in cancer therapy. Current Oncology, 29 (5), 3044-3060. doi: 10.3390/curroncol29050247

Clinical applications of circulating tumour cells and circulating tumour dna in non-small cell lung cancer—an update

Kapeleris, Joanna, Ebrahimi Warkiani, Majid, Kulasinghe, Arutha, Vela, Ian, Kenny, Liz, Ladwa, Rahul, O’Byrne, Kenneth and Punyadeera, Chamindie (2022). Clinical applications of circulating tumour cells and circulating tumour dna in non-small cell lung cancer—an update. Frontiers in Oncology, 12 859152, 1-18. doi: 10.3389/fonc.2022.859152

The role of circulating biomarkers in lung cancer

Herath, Sayuri, Sadeghi Rad, Habib, Radfar, Payar, Ladwa, Rahul, Warkiani, Majid, O’Byrne, Ken and Kulasinghe, Arutha (2022). The role of circulating biomarkers in lung cancer. Frontiers in Oncology, 11 801269, 1-13. doi: 10.3389/fonc.2021.801269

Spatial profiling identifies prognostic features of response to adjuvant therapy in Triple Negative Breast Cancer (TNBC)

Kulasinghe, Arutha, Monkman, James, Shah, Esha T., Matigian, Nicholas, Adams, Mark N. and O’Byrne, Ken (2022). Spatial profiling identifies prognostic features of response to adjuvant therapy in Triple Negative Breast Cancer (TNBC). Frontiers in Oncology, 11 798296, 798296. doi: 10.3389/fonc.2021.798296

Corrigendum: The effects of COVID-19 on the placenta during pregnancy

Rad, Habib Sadeghi, Röhl, Joan, Stylianou, Nataly, Allenby, Mark C., Bazaz, Sajad Razavi, Warkiani, Majid E., Guimaraes, Fernando S F, Clifton, Vicki L. and Kulasinghe, Arutha (2022). Corrigendum: The effects of COVID-19 on the placenta during pregnancy. Frontiers in immunology, 13 998406, 998406. doi: 10.3389/fimmu.2022.998406

Modelling the tumor immune microenvironment for precision immunotherapy

Mackenzie, Nathan J, Nicholls, Clarissa, Templeton, Abby R, Perera, Mahasha PJ, Jeffery, Penny L, Zimmermann, Kate, Kulasinghe, Arutha, Kenna, Tony J, Vela, Ian, Williams, Elizabeth D and Thomas, Patrick B (2022). Modelling the tumor immune microenvironment for precision immunotherapy. Clinical and Translational Immunology, 11 (6) e1400, 1-22. doi: 10.1002/cti2.1400

Profiling of lung SARS-CoV-2 and influenza virus infection dissects virus-specific host responses and gene signatures

Kulasinghe, Arutha, Tan, Chin Wee, dos Santos Miggiolaro, Anna Flavia Ribeiro, Monkman, James, SadeghiRad, Habib, Bhuva, Dharmesh D., da Silva Motta Junior, Jarbas, Vaz de Paula, Caroline Busatta, Nagashima, Seigo, Baena, Cristina Pellegrino, Souza-Fonseca-Guimaraes, Paulo, de Noronha, Lucia, McCulloch, Timothy, Rodrigues Rossi, Gustavo, Cooper, Caroline, Tang, Benjamin, Short, Kirsty R., Davis, Melissa J., Souza-Fonseca-Guimaraes, Fernando, Belz, Gabrielle T. and O'Byrne, Ken (2022). Profiling of lung SARS-CoV-2 and influenza virus infection dissects virus-specific host responses and gene signatures. European Respiratory Journal, 59 (6) 2101881, 1-19. doi: 10.1183/13993003.01881-2021

Understanding the tumor microenvironment in head and neck squamous cell carcinoma

Rad, Habib Sadeghi, Shiravand, Yavar, Radfar, Payar, Ladwa, Rahul, Perry, Chris, Han, Xiaoyuan, Warkiani, Majid Ebrahimi, Adams, Mark N., Hughes, Brett G.M., O'Byrne, Ken and Kulasinghe, Arutha (2022). Understanding the tumor microenvironment in head and neck squamous cell carcinoma. Clinical & Translational Immunology, 11 (6) e1397, e1397. doi: 10.1002/cti2.1397

Endothelial cells are not productively infected by SARS‐CoV‐2

Schimmel, Lilian, Chew, Keng Yih, Stocks, Claudia J., Yordanov, Teodor E., Essebier, Patricia, Kulasinghe, Arutha, Monkman, James, Santos Miggiolaro, Anna Flavia Ribeiro, Cooper, Caroline, Noronha, Lucia, Schroder, Kate, Lagendijk, Anne Karine, Labzin, Larisa I., Short, Kirsty R. and Gordon, Emma J. (2021). Endothelial cells are not productively infected by SARS‐CoV‐2. Clinical and Translational Immunology, 10 (10) e1350, e1350. doi: 10.1002/cti2.1350

Novel systemic inflammation markers to predict COVID-19 prognosis

Karimi, Amirali, Shobeiri, Parnian, Kulasinghe, Arutha and Rezaei, Nima (2021). Novel systemic inflammation markers to predict COVID-19 prognosis. Frontiers in Immunology, 12 741061. doi: 10.3389/fimmu.2021.741061

Flower lose, a cell fitness marker, predicts COVID‐19 prognosis

Yekelchyk, Michail, Madan, Esha, Wilhelm, Jochen, Short, Kirsty R, Palma, António M, Liao, Linbu, Camacho, Denise, Nkadori, Everlyne, Winters, Michael T, Rice, Emily S, Rolim, Inês, Cruz‐Duarte, Raquel, Pelham, Christopher J, Nagane, Masaki, Gupta, Kartik, Chaudhary, Sahil, Braun, Thomas, Pillappa, Raghavendra, Parker, Mark S, Menter, Thomas, Matter, Matthias, Haslbauer, Jasmin Dionne, Tolnay, Markus, Galior, Kornelia D, Matkwoskyj, Kristina A, McGregor, Stephanie M, Muller, Laura K, Rakha, Emad A, Lopez‐Beltran, Antonio ... Gogna, Rajan (2021). Flower lose, a cell fitness marker, predicts COVID‐19 prognosis. EMBO Molecular Medicine, 13 (11) e13714, e13714. doi: 10.15252/emmm.202013714

The identification of circulating tumour DNA using MassARRAY technology in non-small-cell lung cancer (NSCLC)

Kulasinghe, Arutha, O'Leary, Connor, Monkman, James, Bharti, Vandhana, Irwin, Darryl, Dutta, Sanjay, Richard, Derek J., Hughes, Brett, Ladwa, Rahul and O'Byrne, Ken (2021). The identification of circulating tumour DNA using MassARRAY technology in non-small-cell lung cancer (NSCLC). Lung Cancer, 160, 73-77. doi: 10.1016/j.lungcan.2021.08.005

The effects of COVID-19 on the placenta during pregnancy

Rad, Habib Sadeghi, Röhl, Joan, Stylianou, Nataly, Allenby, Mark C., Bazaz, Sajad Razavi, Warkiani, Majid E., Guimaraes, Fernando S. F., Clifton, Vicki L. and Kulasinghe, Arutha (2021). The effects of COVID-19 on the placenta during pregnancy. Frontiers in Immunology, 12 743022. doi: 10.3389/fimmu.2021.743022

Cardiovascular disease in SARS‐CoV‐2 infection

Sato, Kei, Sinclair, Jane E., Sadeghirad, Habib, Fraser, John F., Short, Kirsty R. and Kulasinghe, Arutha (2021). Cardiovascular disease in SARS‐CoV‐2 infection. Clinical and Translational Immunology, 10 (9) e1343, e1343. doi: 10.1002/cti2.1343

The Pandora’s box of novel technologies that may revolutionize lung cancer

Rad, Habib Sadeghi, Rad, Hamid Sadeghi, Shiravand, Yavar, Radfar, Payar, Arpon, David, Warkiani, Majid Ebrahimi, O'Byrne, Ken and Kulasinghe, Arutha (2021). The Pandora’s box of novel technologies that may revolutionize lung cancer. Lung Cancer, 159, 34-41. doi: 10.1016/j.lungcan.2021.06.022

Emerging role of circulating tumor cells in immunotherapy

Rzhevskiy, Alexey, Kapitannikova, Alina, Malinina, Polina, Volovetsky, Arthur, Aboulkheyr Es, Hamidreza, Kulasinghe, Arutha, Thiery, Jean Paul, Maslennikova, Anna, Zvyagin, Andrei V. and Ebrahimi Warkiani, Majid (2021). Emerging role of circulating tumor cells in immunotherapy. Theranostics, 11 (16), 8057-8075. doi: 10.7150/thno.59677

Isolation of circulating tumour cells in patients with glioblastoma using spiral microfluidic technology – a pilot study

Müller Bark, Juliana, Kulasinghe, Arutha, Hartel, Gunter, Leo, Paul, Warkiani, Majid Ebrahimi, Jeffree, Rosalind L., Chua, Benjamin, Day, Bryan W. and Punyadeera, Chamindie (2021). Isolation of circulating tumour cells in patients with glioblastoma using spiral microfluidic technology – a pilot study. Frontiers in Oncology, 11 681130, 681130. doi: 10.3389/fonc.2021.681130

Understanding the tumor microenvironment for effective immunotherapy

Sadeghi Rad, Habib, Monkman, James, Warkiani, Majid E., Ladwa, Rahul, O'Byrne, Ken, Rezaei, Nima and Kulasinghe, Arutha (2021). Understanding the tumor microenvironment for effective immunotherapy. Medicinal Research Reviews, 41 (3), 1474-1498. doi: 10.1002/med.21765

Spatial profiling technologies and applications for brain cancers

Kalita-de Croft, Priyakshi, Rad, Habib Sadeghi, Gasper, Harry, O'Byrne, Ken, Lakhani, Sunil R. and Kulasinghe, Arutha (2021). Spatial profiling technologies and applications for brain cancers. Expert Review of Molecular Diagnostics, 21 (3), 323-332. doi: 10.1080/14737159.2021.1900735

Highly multiplexed digital spatial profiling of the tumor microenvironment of head and neck squamous cell carcinoma patients

Kulasinghe, Arutha, Taheri, Touraj, O'Byrne, Ken, Hughes, Brett G. M., Kenny, Liz and Punyadeera, Chamindie (2021). Highly multiplexed digital spatial profiling of the tumor microenvironment of head and neck squamous cell carcinoma patients. Frontiers in Oncology, 10 607349, 607349. doi: 10.3389/fonc.2020.607349

High-plex and high-throughput digital spatial profiling of non-small-cell lung cancer (NSCLC)

Monkman, James, Taheri, Touraj, Warkiani, Majid Ebrahimi, O’leary, Connor, Ladwa, Rahul, Richard, Derek, O’ Byrne, Ken and Kulasinghe, Arutha (2020). High-plex and high-throughput digital spatial profiling of non-small-cell lung cancer (NSCLC). Cancers, 12 (12) 3551, 1-16. doi: 10.3390/cancers12123551

Protein glycosylation in head and neck cancers: From diagnosis to treatment

Rasheduzzaman, Mohammad, Kulasinghe, Arutha, Dolcetti, Riccardo, Kenny, Liz, Johnson, Newell W., Kolarich, Daniel and Punyadeera, Chamindie (2020). Protein glycosylation in head and neck cancers: From diagnosis to treatment. Biochimica et Biophysica Acta - Reviews on Cancer, 1874 (2) 188422. doi: 10.1016/j.bbcan.2020.188422

Transformation or progression from adenocarcinoma to small cell lung cancer detected by serially tracking mutations in the blood

Kulasinghe, Arutha, Monkman, James, Nalder, Mark, O’Leary, Connor, Ladwa, Rahul and O’Byrne, Ken (2020). Transformation or progression from adenocarcinoma to small cell lung cancer detected by serially tracking mutations in the blood. Reports, 3 (4) 33. doi: 10.3390/reports3040033

Circulating tumor cell clusters: insights into tumour dissemination and metastasis

Herath, Sayuri, Razavi Bazaz, Sajad, Monkman, James, Ebrahimi Warkiani, Majid, Richard, Derek, O’Byrne, Ken and Kulasinghe, Arutha (2020). Circulating tumor cell clusters: insights into tumour dissemination and metastasis. Expert Review of Molecular Diagnostics, 20 (11), 1139-1147. doi: 10.1080/14737159.2020.1846523

Emerging standards and the hybrid model for organizing scientific events during and after the COVID-19 pandemic

Hanaei, Sara, Takian, Amirhossein, Majdzadeh, Reza, Maboloc, Christopher Ryan, Grossmann, Igor, Gomes, Orlando, Milosevic, Milos, Gupta, Manoj, Shamshirsaz, Alireza A., Harbi, Amine, Burhan, Amer M., Uddin, Lucina Q., Kulasinghe, Arutha, Lam, Chi-Ming, Ramakrishna, Seeram, Alavi, Abass, Nouwen, Jan L., Dorigo, Tommaso, Schreiber, Michael, Abraham, Ajith, Shelkovaya, Natalya, Krysztofiak, Wojtek, Ebrahimi Warkiani, Majid, Sellke, Frank, Ogino, Shuji, Barba, Francisco J., Brand, Serge, Vasconcelos, Clara, Salunke, Deepak B. and Rezaei, Nima (2020). Emerging standards and the hybrid model for organizing scientific events during and after the COVID-19 pandemic. Disaster Medicine and Public Health Preparedness, 16 (3), 1-6. doi: 10.1017/dmp.2020.406

Epidermal growth factor receptor (EGFR)-mutated non-small-cell lung cancer (NSCLC)

O’Leary, Connor, Gasper, Harry, Sahin, Katherine B., Tang, Ming, Kulasinghe, Arutha, Adams, Mark N., Richard, Derek J. and O’Byrne, Ken J. (2020). Epidermal growth factor receptor (EGFR)-mutated non-small-cell lung cancer (NSCLC). Pharmaceuticals, 13 (10) 273, 1-16. doi: 10.3390/ph13100273

Ex vivo culture of circulating tumour cells derived from non-small cell lung cancer

Kapeleris, Joanna, Kulasinghe, Arutha, Warkiani, Majid Ebrahimi, Oleary, Connor, Vela, Ian, Leo, Paul, Sternes, Peter, O'Byrne, Kenneth and Punyadeera, Chamindie (2020). Ex vivo culture of circulating tumour cells derived from non-small cell lung cancer. Translational Lung Cancer Research, 9 (5), 1795-1809. doi: 10.21037/tlcr-20-521

The use of three-dimensional DNA fluorescent in situ hybridization (3D DNA FISH) for the detection of Anaplastic Lymphoma Kinase (ALK) in Non-Small Cell Lung Cancer (NSCLC) circulating tumor cells

Kulasinghe, Arutha, Lim, Yenkai, Kapeleris, Joanna, Warkiani, Majid, O'Byrne, Ken and Punyadeera, Chamindie (2020). The use of three-dimensional DNA fluorescent in situ hybridization (3D DNA FISH) for the detection of Anaplastic Lymphoma Kinase (ALK) in Non-Small Cell Lung Cancer (NSCLC) circulating tumor cells. Cells, 9 (6) 1465. doi: 10.3390/cells9061465

Circulating biomarkers in patients with glioblastoma

Müller Bark, Juliana, Kulasinghe, Arutha, Chua, Benjamin, Day, Bryan W. and Punyadeera, Chamindie (2020). Circulating biomarkers in patients with glioblastoma. British Journal of Cancer, 122 (3), 295-305. doi: 10.1038/s41416-019-0603-6

The evolving landscape of predictive biomarkers in immuno-oncology with a focus on spatial technologies

Sadeghi Rad, Habib, Bazaz, Sajad Razavi, Monkman, James, Ebrahimi Warkiani, Majid, Rezaei, Nima, O'Byrne, Ken and Kulasinghe, Arutha (2020). The evolving landscape of predictive biomarkers in immuno-oncology with a focus on spatial technologies. Clinical and Translational Immunology, 9 (11) e1215, 1-12. doi: 10.1002/cti2.1215

An update: circulating tumor cells in head and neck cancer

Kulasinghe, Arutha, Hughes, Brett G. M., Kenny, Liz and Punyadeera, Chamindie (2019). An update: circulating tumor cells in head and neck cancer. Expert Review of Molecular Diagnostics, 19 (12), 1109-1115. doi: 10.1080/14737159.2020.1688145

Isolation of circulating tumor cells in non-small-cell-lung-cancer patients using a multi-flow microfluidic channel

Zhou, Jian, Kulasinghe, Arutha, Bogseth, Amanda, O’Byrne, Ken, Punyadeera, Chamindie and Papautsky, Ian (2019). Isolation of circulating tumor cells in non-small-cell-lung-cancer patients using a multi-flow microfluidic channel. Microsystems and Nanoengineering, 5 (1) 8, 8. doi: 10.1038/s41378-019-0045-6

Phenotypic characterization of circulating lung cancer cells for clinically actionable targets

Kulasinghe, Arutha, Kapeleris, Joanna, Cooper, Carolina, Warkiani, Majid Ebrahimi, O’Byrne, Kenneth and Punyadeera, Chamindie (2019). Phenotypic characterization of circulating lung cancer cells for clinically actionable targets. Cancers, 11 (3) 380, 380. doi: 10.3390/cancers11030380

Capture of circulating tumour cell clusters using straight microfluidic chips

Kulasinghe, Arutha, Zhou, Jian, Kenny, Liz, Papautsky, Ian and Punyadeera, Chamindie (2019). Capture of circulating tumour cell clusters using straight microfluidic chips. Cancers, 11 (1) 89. doi: 10.3390/cancers11010089

A collective route to head and neck cancer metastasis

Kulasinghe, Arutha, Schmidt, Henri, Perry, Chris, Whitfield, Bernard, Kenny, Liz, Nelson, Colleen, Warkiani, Majid E. and Punyadeera, Chamindie (2018). A collective route to head and neck cancer metastasis. Scientific Reports, 8 (1) 746, 1-8. doi: 10.1038/s41598-017-19117-9

The prognostic significance of circulating tumor cells in head and neck and non-small-cell lung cancer

Kulasinghe, Arutha, Kapeleris, Joanna, Kimberley, Rebecca, Mattarollo, Stephen R., Thompson, Erik W., Thiery, Jean-Paul, Kenny, Liz, O’Byrne, Ken and Punyadeera, Chamindie (2018). The prognostic significance of circulating tumor cells in head and neck and non-small-cell lung cancer. Cancer Medicine, 7 (12), 5910-5919. doi: 10.1002/cam4.1832

A pilot study to non-invasively track PIK3CA mutation in head and neck cancer

Schmidt, Henri, Kulasinghe, Arutha, Allcock, Richard J. N., Tan, Lit Yeen, Mokany, Elisa, Kenny, Liz and Punyadeera, Chamindie (2018). A pilot study to non-invasively track PIK3CA mutation in head and neck cancer. Diagnostics, 8 (4) 79. doi: 10.3390/diagnostics8040079

The prognostic role of circulating tumor cells (CTCs) in lung cancer

Kapeleris, Joanna, Kulasinghe, Arutha, Warkiani, Majid E., Vela, Ian, Kenny, Liz, O' Byrne, Kenneth and Punyadeera, Chamindie (2018). The prognostic role of circulating tumor cells (CTCs) in lung cancer. Frontiers in Oncology, 8 (AUG) 311, 311. doi: 10.3389/fonc.2018.00311

The use of microfluidic technology for cancer applications and liquid biopsy

Kulasinghe, Arutha, Wu, Hanjie, Punyadeera, Chamindie and Warkiani, Majid Ebrahimi (2018). The use of microfluidic technology for cancer applications and liquid biopsy. Micromachines, 9 (8) 397, 1-22. doi: 10.3390/mi9080397

Circulating tumour cell PD-L1 test for head and neck cancers

Kulasinghe, Arutha, Kenny, Liz and Punyadeera, Chamindie (2017). Circulating tumour cell PD-L1 test for head and neck cancers. Oral Oncology, 75, 6-7. doi: 10.1016/j.oraloncology.2017.10.011

PD-L1 expressing circulating tumour cells in head and neck cancers

Kulasinghe, Arutha, Perry, Chris, Kenny, Liz, Warkiani, Majid E., Nelson, Colleen and Punyadeera, Chamindie (2017). PD-L1 expressing circulating tumour cells in head and neck cancers. BMC Cancer, 17 (1) 333, 333. doi: 10.1186/s12885-017-3316-3

Enrichment of circulating head and neck tumour cells using spiral microfluidic technology

Kulasinghe, Arutha, Tran, Thao Huynh Phuoc, Blick, Tony, O'Byrne, Ken, Thompson, Erik W., Warkiani, Majid E., Nelson, Colleen, Kenny, Liz and Punyadeera, Chamindie (2017). Enrichment of circulating head and neck tumour cells using spiral microfluidic technology. Scientific Reports, 7 (1) 42517, 42517. doi: 10.1038/srep42517

The development of a liquid biopsy for head and neck cancers

Schmidt, Henri, Kulasinghe, Arutha, Kenny, Liz and Punyadeera, Chamindie (2016). The development of a liquid biopsy for head and neck cancers. Oral Oncology, 61, 8-11. doi: 10.1016/j.oraloncology.2016.07.014

Impact of label-free technologies in head and neck cancer circulating tumour cells

Kulasinghe, Arutha, Kenny, Liz, Perry, Chris, Thiery, Jean-Paul, Jovanovic, Lidija, Vela, Ian, Nelson, Colleen and Punyadeera, Chamindie (2016). Impact of label-free technologies in head and neck cancer circulating tumour cells. Oncotarget, 7 (44), 71223-71234. doi: 10.18632/oncotarget.12086

A liquid biopsy for head and neck cancers

Schmidt, Henri, Kulasinghe, Arutha, Perry, Chris, Nelson, Colleen and Punyadeera, Chamindie (2016). A liquid biopsy for head and neck cancers. Expert Review of Molecular Diagnostics, 16 (2), 165-172. doi: 10.1586/14737159.2016.1127758

Epithelial-mesenchymal axis in head and neck cancer cell lines

Kulasinghe, Arutha, Perry, Chris, Boyle, Glen M., O'Byrne, Ken, Davies, Anthony, Jovanovic, Lidija, Nelson, Colleen and Punyadeera, Chamindie (2016). Epithelial-mesenchymal axis in head and neck cancer cell lines. Journal of Solid Tumors, 6 (1). doi: 10.5430/jst.v6n1p28

Short term ex-vivo expansion of circulating head and neck tumour cells

Kulasinghe, Arutha, Perry, Chris, Warkiani, Majid E., Blick, Tony, Davies, Anthony, O'Byrne, Ken, Thompson, Erik W., Nelson, Colleen C., Vela, Ian and Punyadeera, Chamindie (2016). Short term ex-vivo expansion of circulating head and neck tumour cells. Oncotarget, 7 (37), 60101-60109. doi: 10.18632/oncotarget.11159

Circulating tumour cells in metastatic head and neck cancers

Kulasinghe, Arutha, Perry, Chris, Jovanovic, Lidija, Nelson, Colleen and Chamindie Punyadeera, (2015). Circulating tumour cells in metastatic head and neck cancers. International Journal of Cancer, 136 (11), 2515-2523. doi: 10.1002/ijc.29108

105 Identifying a role for macrophages in predicting immunotherapy responses of non-small cell lung cancer (NSCLC)

Ma, Ning, Pratapa, Aditya, Monkman, James, O’Byrne, Ken and Kulasinghe, Arutha (2023). 105 Identifying a role for macrophages in predicting immunotherapy responses of non-small cell lung cancer (NSCLC). BMJ Publishing Group Ltd. doi: 10.1136/jitc-2023-sitc2023.0105

90 Spatio-temporal monitoring of the tumor microenvironment in cutaneous squamous cell carcinoma

Jhaveri, Niyati, Klymyshyn, Dmytro, Pratapa, Aditya, Cheikh, Bassem Ben, Monkman, James, Prater, Michael, Nelson, Nadine, Mammadova, Najiba and Kulasinghe, Arutha (2023). 90 Spatio-temporal monitoring of the tumor microenvironment in cutaneous squamous cell carcinoma. BMJ Publishing Group Ltd. doi: 10.1136/jitc-2023-sitc2023.0090

99 From pixels to clinical Insights: deciphering spatial tumour-immune microenvironment features of immunotherapy response and resistance in lung cancer

Kulasinghe, Arutha (2023). 99 From pixels to clinical Insights: deciphering spatial tumour-immune microenvironment features of immunotherapy response and resistance in lung cancer. BMJ Publishing Group Ltd. doi: 10.1136/jitc-2023-sitc2023.0099

Extracellular Small Vesicle Phosphorylated PD-L1 Liquid Biopsy Levels Correlate with Tumour Proportion Score (TPS) in NSCLC

O'Byrne, K., Shanmugasundaram, K.B., Ahmed, E., Kulasinghe, A., Monkman, J., Fletcher, J.A., Mainwaring, P.N., Masud, M.K., Park, H., Hossain, M.S.A., Yamauchi, Y., Sina, A.A.I., Wuethrich, A. and Trau, M. (2023). Extracellular Small Vesicle Phosphorylated PD-L1 Liquid Biopsy Levels Correlate with Tumour Proportion Score (TPS) in NSCLC. 2023 World Conference on Lung Cancer, Singapore, 9-12 September 2023. New York, NY United States: Elsevier. doi: 10.1016/j.jtho.2023.09.432

Spatial phenotyping of cytokine signatures reflecting the immunotherapy responses in head and neck cancer

Ji, HaYeun, Jhaveri, Niyati, Pratapa, Aditya, Ma, Ning, Ben Cheikh, Bassem, Monkman, James, O'Byrne, Ken, Hughes, Brett, Kulasinghe, Arutha and Braubach, Oliver (2023). Spatial phenotyping of cytokine signatures reflecting the immunotherapy responses in head and neck cancer. Annual Meeting of the American-Association-of-Immunologists (AAI), Washington Dc, May 11-15, 2023. BETHESDA: AMER ASSOC IMMUNOLOGISTS.

Abstract 4626: Spatial profiling of the tumor microenvironment in head and neck cancer identifies immune checkpoints and proteins involved in cell death signaling biomarkers of immunotherapy response

Sadeghirad, Habib, Liu, Ning, Monkman, James, Tan, Chin Wee, Cooper, Caroline, Caldera, Jeni, Church, Sarah, Schneider, Fabian, Mansfield, James Robert, O'Byrne, Ken, Davis, Melissa, Hughes, Brett and Kulasinghe, Arutha (2023). Abstract 4626: Spatial profiling of the tumor microenvironment in head and neck cancer identifies immune checkpoints and proteins involved in cell death signaling biomarkers of immunotherapy response. AACR Annual Meeting 2023, Orlando, FL United States, 14-19 April 2023. Philadelphia, PA United States: American Association for Cancer Research. doi: 10.1158/1538-7445.am2023-4626

Abstract 4627: Immune profiling of immunotherapy and adjuvant chemotherapy pretreatment NSCLC tissues by CODEX

Monkman, James, Moradi, Afshin, O'Leary, Connor, Wu, Zhenqin, Hamel, Steven, Mason, David, Schneider, Fabian, Mansfield, James Robert, Meyer, Aaron, O'Byrne, Ken and Kulasinghe, Arutha (2023). Abstract 4627: Immune profiling of immunotherapy and adjuvant chemotherapy pretreatment NSCLC tissues by CODEX. AACR Annual Meeting 2023, Orlando, FL United States, 14-19 April 2023. Philadelphia, PA United States: American Association for Cancer Research. doi: 10.1158/1538-7445.am2023-4627

Abstract 5647: Single cell, multiomic spatial phenotyping of immunotherapy responses in head and neck cancer

Ji, HaYeun, Jhaveri, Niyati, Ma, Ning, Cheikh, Bassem B., Pratapa, Aditya, Monkman, James, O’Byrne, Ken, Hughes, Brett, Kulasinghe, Arutha and Braubach, Oliver (2023). Abstract 5647: Single cell, multiomic spatial phenotyping of immunotherapy responses in head and neck cancer. AACR Annual Meeting 2023, Orlando, FL United States, 14-19 April 2023. Philadelphia, PA United States: American Association for Cancer Research. doi: 10.1158/1538-7445.am2023-5647

Abstract 6768: The potential predictive role of spatial phenotyping in non-small cell lung cancer

Ma, Ning, Pratapa, Aditya, Monkman, James, O’Byrne, Ken, Braubach, Oliver and Kulasinghe, Arutha (2023). Abstract 6768: The potential predictive role of spatial phenotyping in non-small cell lung cancer. AACR Annual Meeting 2023, Orlando, FL United States, 14-19 April 2023. Philadelphia, PA United States: American Association for Cancer Research. doi: 10.1158/1538-7445.am2023-6768

Abstract 6774: The development of a spatial metabolic map of immunotherapy sensitive and resistant cutaneous skin carcinoma

Jhaveri, Niyati, Klymyshyn, Dmytro, Cheikh, Bassem B., Monkman, James, Winkowski, Dan, Mansfield, James, Basu, Subham, Prater, Michael, Nelson, Nadine, Belz, Gabrielle, Braubach, Oliver and Kulasinghe, Arutha (2023). Abstract 6774: The development of a spatial metabolic map of immunotherapy sensitive and resistant cutaneous skin carcinoma. AACR Annual Meeting 2023, Orlando, FL United States, 14-19 April 2023. Philadelphia, PA United States: American Association for Cancer Research. doi: 10.1158/1538-7445.am2023-6774

Multiomic dissection of immunotherapy response groups in lung cancer

Kulasinghe, Arutha (2023). Multiomic dissection of immunotherapy response groups in lung cancer. HOBOKEN: WILEY.

Polo-like kinase-1 is a novel biomarker in resected non-small cell lung cancer treated with adjuvant platinum-based chemotherapy

O'Leary, Connor, Monkman, James, Richard, Derek, O'Byrne, Kenneth, Kulasinghe, Arutha and Adams, Mark (2023). Polo-like kinase-1 is a novel biomarker in resected non-small cell lung cancer treated with adjuvant platinum-based chemotherapy. HOBOKEN: WILEY.

Decoding immunotherapy responses with high-dimensional and high-throughput spatial phenotyping of non-small cell lung cancer (NSCLC)

Ma, Ning, Pratapa, Aditya, Monkman, James, O’Byrne, Ken, Braubach, Oliver and Kulasinghe, Arutha (2022). Decoding immunotherapy responses with high-dimensional and high-throughput spatial phenotyping of non-small cell lung cancer (NSCLC). SITC 37th Annual Meeting (SITC 2022), Boston, MA USA, 8-12 November 2022. London, United Kingdom: BMJ Publishing Group. doi: 10.1136/jitc-2022-sitc2022.0120

Deep single-cell, proteogenomic insights from SARS-CoV-2 infected lung tissues

Kulasinghe, Arutha, Tan, Chin Wee, Liu, Ning, Monkman, James, Killingbeck, Emily, Kim, Youngmi, Pan, Liuliu, Blick, Tony, Bhuva, Dharmesh, Feher, Kristen, Leon, Michael, Gregory, Mark, Short, Kirsty, Guimaraes, Fernando, Rhodes, Michael, Belz, Gabrielle and Davis, Melissa (2022). Deep single-cell, proteogenomic insights from SARS-CoV-2 infected lung tissues. SITC 37th Annual Meeting (SITC 2022), Boston, MA USA, 8-12 November 2022. London, United Kingdom: BMJ Publishing Group. doi: 10.1136/jitc-2022-sitc2022.0923

Delineation of spatial tissue signatures of immunotherapy response groups in non-small cell lung cancer (NSCLC)

Kulasinghe, Arutha, Monkman, James, Kim, Honesty, Mayer, Aaron, Mehdi, Ahmed, Cumberbatch, Marie, Bhagat, Milan, Schneider, Fabian, Thaagard, Jeppe, Mansfield, James, Ladwa, Rahul, Mueller, Scott, Adams, Mark and O’byrne, Kenneth (2022). Delineation of spatial tissue signatures of immunotherapy response groups in non-small cell lung cancer (NSCLC). SITC 37th Annual Meeting (SITC 2022), Boston, MA USA, 8-12 November 2022. London, United Kingdom: BMJ Publishing Group. doi: 10.1136/jitc-2022-sitc2022.0118

High-dimensional spatial phenotyping of cutaneous squamous cell carcinoma from immune-competent and immunocompromised patients

Kulasinghe, Arutha, Jhaveri, Niyati, Klymyshyn, Dmytro, Cheikh, Bassem Ben, Ladwa, Rahul, Liu, Howard, Cooper, Caroline, Belz, Gabrielle, Porceddu, Sandro and Braubach, Oliver (2022). High-dimensional spatial phenotyping of cutaneous squamous cell carcinoma from immune-competent and immunocompromised patients. SITC 37th Annual Meeting (SITC 2022), Boston, MA United States, 8–12 November 2022. London, United Kingdom: BMJ Group. doi: 10.1136/jitc-2022-sitc2022.0079

High-plex spatial proteomic profiling of immunotherapy response groups in head and neck cancer identifies tissue signatures associated with therapy response

Kulasinghe, Arutha, Sadeghirad, Habib, Liu, Ning, Monkman, James, Tan, Chin Wee, Cooper, Caroline, Church, Sarah, Schneider, Fabian, Thaagard, Jeppe, Mansfield, James, O’byrne, Kenneth, Davis, Melissa and Hughes, Brett (2022). High-plex spatial proteomic profiling of immunotherapy response groups in head and neck cancer identifies tissue signatures associated with therapy response. SITC 37th Annual Meeting (SITC 2022), Boston, MA United States, 8–12 November 2022. London, United Kingdom: BMJ Group. doi: 10.1136/jitc-2022-sitc2022.0117

Abstract 3817: A single-cell, spatial multiomics atlas and cellular interactome of all major skin cancer types

Grice, Laura, Ni, Guiyan, Jin, Xinnan, Tran, Minh, Killingbeck, Emily, Gregory, Mark, Mulay, Onkar, Teoh, Siok-Min, Kulasinghe, Arutha, Leon, Michael, Murphy, Sarah, Warren, Sarah, Kim, Youngmi and Nguyen, Quan (2022). Abstract 3817: A single-cell, spatial multiomics atlas and cellular interactome of all major skin cancer types. American Association for Cancer Research Annual Meeting, Philadelphia, PA, United States, 8-13 April 2022. Philadelphia, PA, United States: American Association for Cancer Research. doi: 10.1158/1538-7445.am2022-3817

Mapping the spatial biology of COVID-19 immunopathology in placenta tissues

Ma, Ning, Braubach, Oliver, Rebutini, Patricia Zadorosnei, Machado-Souza, Cleber, Stonoga, Emanuele Therezinha Schueda, de Noronha, Lucia, Souza-Fonseca-Guimaraes, Fernando and Kulasinghe, Arutha (2022). Mapping the spatial biology of COVID-19 immunopathology in placenta tissues. Immunology 2022 Meeting, Portland, OR United States, 6-10 May 2022. Rockville, MD United States: American Association of Immunologists. doi: 10.4049/jimmunol.208.supp.125.20

Genetic mutations and signatures in lung cancer – findings from a whole exome sequencing platform

Dutta, Sanjay, Leo, Paul, Kulasinghe, Arutha, Monkman, James, Pennisi, David, Roberts, Kate, Ladwa, Rahul and O’Byrne, Ken (2021). Genetic mutations and signatures in lung cancer – findings from a whole exome sequencing platform. 19th Annual British Thoracic Oncology Group Conference 2021, Virtual, 22-23 April 2021. Shannon, Ireland: Elsevier Ireland. doi: 10.1016/s0169-5002(21)00200-2

The identification of circulating tumour DNA using MassARRAY technology in non-small-cell lung cancer (NSCLC)

Kulasinghe, Arutha, Monkman, James, Dutta, Sanjay, O’Leary, Connor, Ladwa, Rahul and O’Byrne, Ken (2021). The identification of circulating tumour DNA using MassARRAY technology in non-small-cell lung cancer (NSCLC). 19th Annual British Thoracic Oncology Group Conference 2021, Virtual, 22-23 April 2021. Shannon, Ireland: Elsevier Ireland. doi: 10.1016/s0169-5002(21)00199-9

The role of the immune microenvironment in EGFR mutant NSCLC

Monkman, James, Kulasinghe, Arutha, O’Leary, Connor, Richard, Derek and O’Byrne, Ken (2021). The role of the immune microenvironment in EGFR mutant NSCLC. 19th Annual British Thoracic Oncology Group Conference, Online, 22-23 April 2021. Shannon, Ireland: Elsevier Ireland. doi: 10.1016/s0169-5002(21)00204-x

Highly multiplexed digital spatial profiling of the tumor microenvironment of non-small-cell lung cancer (NSCLC)

Kulasinghe, Arutha, O’Leary, Connor, Ladwa, Rahul, Warkiani, Majid and O’byrne, Kenneth (2020). Highly multiplexed digital spatial profiling of the tumor microenvironment of non-small-cell lung cancer (NSCLC). 35th Anniversary Annual Meeting (SITC 2020), Virtual, 9-14 November 2020. London, United Kingdom: BMJ Group. doi: 10.1136/jitc-2020-sitc2020.0043

Abstract 3384: characterization of the tumor microenvironment and liquid biopsy in head and neck and non-small cell lung cancer

Kulasinghe, Arutha, Kapeleris, Joanna, Kenny, Liz, Hughes, Brett, Warkiani, Majid, Vela, Ian, Thiery, Jean-Paul, O'Byrne, Ken and Punyadeera, Chamindie (2020). Abstract 3384: characterization of the tumor microenvironment and liquid biopsy in head and neck and non-small cell lung cancer. AACR Annual Meeting 2020, Philadelphia, PA USA, 27-28 April 2020 and 22-24 June 2020. Philadelphia, PA USA: American Association for Cancer Research. doi: 10.1158/1538-7445.am2020-3384

Abstract A03: isolation, characterization, and expansion of circulating tumor cells in head and neck cancers

Kulasinghe, Arutha, Kapeleris, Joanna, Kenny, Liz, Warkiani, Majid, Vela, Ian, Thiery, Jean Paul, O’Byrne, Ken and Punyadeera, Chamindie (2020). Abstract A03: isolation, characterization, and expansion of circulating tumor cells in head and neck cancers. AACR-AHNS Head and Neck Cancer Conference: Optimizing Survival and Quality of Life through Basic, Clinical, and Translational Research, Austin, TX USA, 29-30 April 2019. Philadelphia, PA USA: American Association for Cancer Research. doi: 10.1158/1557-3265.aacrahns19-a03

Culture of circulating tumour cells derived from non-small cell lung cancer

O'Byrne, Kenneth John, Kapeleris, Joanna, Kulasinghe, Arutha, Warkiani, Majid E., O'Leary, Connor Gerard, Ladwa, Rahul, Vela, Ian, Leo, Paul, Sternes, Peter and Punyadeera, Chamindie (2020). Culture of circulating tumour cells derived from non-small cell lung cancer. 2020 ASCO Annual Meeting, Online, 30 May 2020. Alexandria, VA USA: American Society of Clinical Oncology. doi: 10.1200/jco.2020.38.15_suppl.e21692

Abstract 5572: Circulating tumor cells: The tumor trail left in the blood

Kulasinghe, Arutha, Perry, Chris, Kenny, Liz, Blick, Tony, Warkiani, Majid, Vela, Ian, O'Byrne, Ken, Thiery, Jean-Paul, Thompson, Erik, Nelson, Colleen and Punyadeera, Chamindie (2018). Abstract 5572: Circulating tumor cells: The tumor trail left in the blood. Annual Meeting of the American-Association-for-Cancer-Research (AACR), Chicago Il, Apr 14-18, 2018. PHILADELPHIA: American Association for Cancer Research. doi: 10.1158/1538-7445.am2018-5572

IL-2 stromal signatures dissect immunotherapy response groups in nonsmall cell lung cancer (NSCLC)

Monkman, James, Kim, Honesty, Mayer, Aaron, Mehdi, Ahmed, Matigian, Nicholas, Cumberbatch, Marie, Bhagat, Milan, Ladwa, Rahul, Mueller, Scott N., Adams, Mark N., O’Byrne, Ken and Kulasinghe, Arutha (2021). IL-2 stromal signatures dissect immunotherapy response groups in nonsmall cell lung cancer (NSCLC).

Circulating tumour cells in head and neck cancers

Kulasinghe, Arutha Jeevana (2021). Circulating tumour cells in head and neck cancers. PhD Thesis, Faculty of Health, Queensland University of Technology. doi: 10.5204/thesis.eprints.110534