The University of Queensland

Simultaneous BRAFV600E protein and DNA aberration detection in circulating melanoma cells using an integrated multimolecular sensor

Wuethrich, Alain, Dey, Shuvashis, Koo, Kevin M, Sina, Abu A. I. and Trau, Matt (2021). Simultaneous BRAFV600E protein and DNA aberration detection in circulating melanoma cells using an integrated multimolecular sensor. Melanoma. (pp. 265-276) New York, NY, United States: Humana Press. doi: 10.1007/978-1-0716-1205-7_20

Microfluidics for early-stage cancer detection

Dey, Shuvashis (2021). Microfluidics for early-stage cancer detection. Nanotechnology in cancer management: precise diagnostics toward personalized health care. (pp. 185-209) edited by Kamil Reza Khondakar and Ajeet Kumar Kaushik. Amsterdam, Netherlands: Elsevier. doi: 10.1016/B978-0-12-818154-6.00002-0

Cancer‐on‐Chip and Integrative Tumor Microenvironment Sensor Technologies for Progressing Precision Radiotherapy

Dey, Shuvashis, Kinoshita, Masaki, Puttick, Simon, Rose, Stephen, Trau, Matt, Roberts, Matthew J. and Koo, Kevin M. (2024). Cancer‐on‐Chip and Integrative Tumor Microenvironment Sensor Technologies for Progressing Precision Radiotherapy. Advanced Sensor Research. doi: 10.1002/adsr.202300193

A mesoporous gold biosensor to investigate immune checkpoint protein heterogeneity in single lung cancer cells

Ahmed, Emtiaz, Masud, Mostafa Kamal, Komatineni, Prathyusha, Dey, Shuvashis, Lobb, Richard, Hossain, Md Shahriar A., Möller, Andreas, Yamauchi, Yusuke, Sina, Abu Ali Ibn and Trau, Matt (2024). A mesoporous gold biosensor to investigate immune checkpoint protein heterogeneity in single lung cancer cells. Biosensors and Bioelectronics, 249 115984, 115984. doi: 10.1016/j.bios.2023.115984

A microfluidic liquid biopsy platform to monitor protein biomarker heterogeneity in single circulating therapy‐resistance cancer cell

Ahmed, Emtiaz, Shanmugasundaram, Karthik Balaji, Li, Junrong, Behren, Andreas, Lobb, Richard, Möller, Andreas, Wuethrich, Alain, Dey, Shuvashis, Sina, Abu Ali Ibn and Trau, Matt (2023). A microfluidic liquid biopsy platform to monitor protein biomarker heterogeneity in single circulating therapy‐resistance cancer cell. Advanced Sensor Research, 2 (12). doi: 10.1002/adsr.202300059

A universal reagent for detection of emerging diseases using bioengineered multifunctional yeast nanofragments

Li, Junrong, Howard, Christopher B., Dey, Shuvashis, Lowry, Kym, Whiley, David M., Puttick, Simon, Rose, Stephen, Lobb, Richard J., Wuethrich, Alain, Edwardraja, Selvakumar and Trau, Matt (2023). A universal reagent for detection of emerging diseases using bioengineered multifunctional yeast nanofragments. Nature Nanotechnology, 18 (10), 1222-1229. doi: 10.1038/s41565-023-01415-1

Electrochemical fabrication of mesoporous metal-alloy films

Bashir, Javeria, Chowdhury, Md. Belal, Kathak, Rahanuma Raihanu, Dey, Shuvashis, Tasnim, Atiya Tahira, Amin, Mohammed A., Kaneti, Yusuf Valentino, Masud, Mostafa Kamal and Hossain, Md. Shahriar A (2023). Electrochemical fabrication of mesoporous metal-alloy films. Materials Advances, 4 (2), 408-431. doi: 10.1039/d2ma00480a

Nanophotonic immunoarray with electrochemically roughened surfaces for handheld detection of secreted PD-L1 to predict immuno-oncology efficacy

Dey, Shuvashis, Koo, Kevin M., Ahmed, Emtiaz and Trau, Matt (2023). Nanophotonic immunoarray with electrochemically roughened surfaces for handheld detection of secreted PD-L1 to predict immuno-oncology efficacy. Lab on a Chip, 23 (15), 3443-3452. doi: 10.1039/d3lc00523b

An electrochemical and raman scattering dual detection biosensor for rapid screening and biomolecular profiling of cancer biomarkers

Dey, Shuvashis, Ahmed, Emtiaz, Somvanshi, Pranjal Satishchandra, Sina, Abu Ali Ibn, Wuethrich, Alain and Trau, Matt (2022). An electrochemical and raman scattering dual detection biosensor for rapid screening and biomolecular profiling of cancer biomarkers. Chemosensors, 10 (3) 93. doi: 10.3390/chemosensors10030093

In situ single cell proteomics reveals circulating tumor cell heterogeneity during treatment

Reza, K. Kamil, Dey, Shuvashis, Wuethrich, Alain, Wang, Jing, Behren, Andreas, Antaw, Fiach, Wang, Yuling, Sina, Abu Ali Ibn and Trau, Matt (2021). In situ single cell proteomics reveals circulating tumor cell heterogeneity during treatment. ACS Nano, 15 (7) acsnano.0c10008, 11231-11243. doi: 10.1021/acsnano.0c10008

Multiomics: The Growing Impact of Micro/Nanomaterial‐Based Systems in Precision Oncology: Translating “Multiomics” Technologies (Adv. Funct. Mater. 37/2020)

Li, Junrong, Wuethrich, Alain, Dey, Shuvashi, Lane, Rebecca E., Sina, Abu A. I., Wang, Jing, Wang, Yuling, Puttick, Simon, Koo, Kevin M. and Trau, Matt (2020). Multiomics: The Growing Impact of Micro/Nanomaterial‐Based Systems in Precision Oncology: Translating “Multiomics” Technologies (Adv. Funct. Mater. 37/2020). Advanced Functional Materials, 30 (37) 2070248. doi: 10.1002/adfm.202070248

Surface-enhanced Raman spectroscopy for cancer immunotherapy applications: opportunities, challenges, and current progress in nanomaterial strategies

Dey, Shuvashis, Trau, Matt and Koo, Kevin M. (2020). Surface-enhanced Raman spectroscopy for cancer immunotherapy applications: opportunities, challenges, and current progress in nanomaterial strategies. Nanomaterials, 10 (6) 1145, 1-15. doi: 10.3390/nano10061145

Methylation dependent gold adsorption behaviour identifies cancer derived extracellular vesicular DNA

Sina, Abu Ali Ibn, Lin, Ting-Yun, Vaidyanathan, Ramanathan, Wang, Zhaoran, Dey, Shuvashis, Wang, Jing, Behren, Andreas, Wuethrich, Alain, Carrascosa, Laura G. and Trau, Matt (2020). Methylation dependent gold adsorption behaviour identifies cancer derived extracellular vesicular DNA. Nanoscale Horizons, 5 (9), 1317-1323. doi: 10.1039/d0nh00258e

The growing impact of micro/nanomaterial-based systems in precision oncology: translating “multiomics” technologies

Li, Junrong, Wuethrich, Alain, Dey, Shuvashi, Lane, Rebecca E., Sina, Abu A. I., Wang, Jing, Wang, Yuling, Puttick, Simon, Koo, Kevin M. and Trau, Matt (2020). The growing impact of micro/nanomaterial-based systems in precision oncology: translating “multiomics” technologies. Advanced Functional Materials, 30 (37) 1909306, 1909306. doi: 10.1002/adfm.201909306

Single droplet detection of immune checkpoints on a multiplexed electrohydrodynamic biosensor

Wuethrich, Alain, Rajkumar, Aswin Raj, Shanmugasundaram, Karthik Balaji, Reza, Kamil K., Dey, Shuvashis, Howard, Christopher B., Sina, Abu Ali Ibn and Trau, Matt (2019). Single droplet detection of immune checkpoints on a multiplexed electrohydrodynamic biosensor. The Analyst, 144 (23), 6914-6921. doi: 10.1039/c9an01450k

Toward personalized cancer treatment: from diagnostics to therapy monitoring in miniaturized electrohydrodynamic systems

Khondakar, Kamil Reza, Dey, Shuvashis, Wuethrich, Alain, Sina, Abu Ali Ibn and Trau, Matt (2019). Toward personalized cancer treatment: from diagnostics to therapy monitoring in miniaturized electrohydrodynamic systems. Accounts of Chemical Research, 52 (8) acs.accounts.9b00192, 2113-2123. doi: 10.1021/acs.accounts.9b00192

A microfluidic-SERSplatform for isolation and immuno-phenotyping of antigen specific T-cells

Dey, Shuvashis, Vaidyanathan, Ramanathan, Reza, K. Kamil, Wang, Jing, Wang, Yuling, Nel, Hendrik J., Law, Soi-Cheng, Tyler, Jennifer, Rossjohn, Jamie, Reid, Hugh H., Ibn Sina, Abu Ali, Thomas, Ranjeny and Trau, Matt (2019). A microfluidic-SERSplatform for isolation and immuno-phenotyping of antigen specific T-cells. Sensors and Actuators B: Chemical, 284, 281-288. doi: 10.1016/j.snb.2018.12.099

Tracking antigen specific T-cells: technological advancement and limitations

Dey, Shuvashis, Kamil Reza, K., Wuethrich, Alain, Korbie, Darren, Ibn Sina, Abu Ali and Trau, Matt (2019). Tracking antigen specific T-cells: technological advancement and limitations. Biotechnology Advances, 37 (1), 145-153. doi: 10.1016/j.biotechadv.2018.11.010

An integrated multi-molecular sensor for simultaneous BRAFV600E protein and DNA single point mutation detection in circulating tumour cells

Dey, Shuvashis, Koo, Kevin, Wang, Zhaoran, Sina, Abu Ali Ibn, Wuethrich, Alain and Trau, Matt (2018). An integrated multi-molecular sensor for simultaneous BRAFV600E protein and DNA single point mutation detection in circulating tumour cells. Lab on a Chip, 19 (5), 738-748. doi: 10.1039/c8lc00991k

A sample-to-targeted gene analysis biochip for nanofluidic manipulation of solid-phase circulating tumor nucleic acid amplification in liquid biopsies

Koo, Kevin M., Dey, Shuvashis and Trau, Matt (2018). A sample-to-targeted gene analysis biochip for nanofluidic manipulation of solid-phase circulating tumor nucleic acid amplification in liquid biopsies. ACS Sensors, 3 (12) acssensors.8b01011, 2597-2603. doi: 10.1021/acssensors.8b01011

Parallel profiling of cancer cells and proteins using a graphene oxide functionalized ac-EHD SERS immunoassay

Reza, K. Kamil, Dey, Shuvashis, Wuethrich, Alain, Sina, Abu Ali Ibn, Korbie, Darren, Wang, Yuling and Trau, Matt (2018). Parallel profiling of cancer cells and proteins using a graphene oxide functionalized ac-EHD SERS immunoassay. Nanoscale, 10 (39), 18482-18491. doi: 10.1039/c8nr02886a

Amplification-free multi-RNA-type profiling for cancer risk stratification via alternating current electrohydrodynamic nanomixing

Koo, Kevin M., Dey, Shuvashis and Trau, Matt (2018). Amplification-free multi-RNA-type profiling for cancer risk stratification via alternating current electrohydrodynamic nanomixing. Small, 14 (17) 1704025, e1704025. doi: 10.1002/smll.201704025

Adjustable fluidic nanomixing: amplification-free multi-RNA-type profiling for cancer risk stratification via alternating current electrohydrodynamic nanomixing (Small 17/2018)

Koo, Kevin M., Dey, Shuvashis and Trau, Matt (2018). Adjustable fluidic nanomixing: amplification-free multi-RNA-type profiling for cancer risk stratification via alternating current electrohydrodynamic nanomixing (Small 17/2018). Small, 14 (17) 1870075. doi: 10.1002/smll.201870075

A multiplex microplatform for the detection of multiple DNA methylation events using gold-DNA affinity

Ibn Sina, Abu Ali, Foster, Matthew Thomas, Korbie, Darren, Carrascosa, Laura G., Shiddiky, Muhammad J. A., Gao, Jing, Dey, Shuvashis and Trau, Matt (2017). A multiplex microplatform for the detection of multiple DNA methylation events using gold-DNA affinity. Analyst, 142 (19), 3573-3578. doi: 10.1039/c7an00611j

Electrohydrodynamic-induced SERS immunoassay for extensive multiplexed biomarker sensing

Reza, Khondakar Kamil, Wang, Jing, Vaidyanathan, Ramanathan, Dey, Shuvashis, Wang, Yuling and Trau, Matt (2017). Electrohydrodynamic-induced SERS immunoassay for extensive multiplexed biomarker sensing. Small, 13 (9) 1602902. doi: 10.1002/smll.201602902

Real time and label free profiling of clinically relevant exosomes

Sina, Abu Ali Ibn, Vaidyanathan, Ramanathan, Dey, Shuvashis, Carrascosa, Laura G., Shiddiky, Muhammad J. A. and Trau, Matt (2016). Real time and label free profiling of clinically relevant exosomes. Scientific Reports, 6 (30460) 30460, 1-9. doi: 10.1038/srep30460

Electric field induced isolation, release, and recapture of tumor cells

Dey, Shuvashis, Vaidyanathan, Ramanathan, Carrascosa, Laura G., Shiddiky, Muhammad J. A. and Trau, Matt (2016). Electric field induced isolation, release, and recapture of tumor cells. ACS Sensors, 1 (4), 399-405. doi: 10.1021/acssensors.5b00157

Capture and on-chip analysis of melanoma cells using tunable surface shear forces

Tsao, Simon Chang-Hao, Vaidyanathan, Ramanathan, Dey, Shuvashis, Carrascosa, Laura G., Christophi, Christopher, Cebon, Jonathan, Shiddiky, Muhammad J. A., Behren, Andreas and Trau, Matt (2016). Capture and on-chip analysis of melanoma cells using tunable surface shear forces. Scientific Reports, 6 (1) 19709, 19709.1-19709.10. doi: 10.1038/srep19709

Alternating current electrohydrodynamics in microsystems: Pushing biomolecules and cells around on surfaces

Vaidyanathan, Ramanathan, Dey, Shuvashis, Carrascosa, Laura G., Shiddiky, Muhammad J.A. and Trau, Matt (2015). Alternating current electrohydrodynamics in microsystems: Pushing biomolecules and cells around on surfaces. Biomicrofluidics, 9 (061501) 061501, 061501. doi: 10.1063/1.4936300

Miniaturized techniques for rare cell isolation, release and molecular analysis

Dey, Shuvashis (2019). Miniaturized techniques for rare cell isolation, release and molecular analysis. PhD Thesis, Australian Institute for Bioengineering and Nanotechnology, The University of Queensland. doi: 10.14264/uql.2019.313