The University of Queensland

Live confocal imaging of zebrafish notochord cells under mechanical stress in vivo

Lim, Ye-Wheen, Lo, Harriet P., Hall, Thomas E. and Parton, Robert G. (2020). Live confocal imaging of zebrafish notochord cells under mechanical stress in vivo. Caveolae: methods and protocols. (pp. 175-187) edited by Cedric M. Blouin. New York, NY, United States: Humana Press. doi: 10.1007/978-1-0716-0732-9_16

Atrogin-1 promotes muscle homeostasis by regulating levels of endoplasmic reticulum chaperone BiP

Ruparelia, Avnika A., Montandon, Margo, Merriner, Jo, Huang, Cheng, Wong, Siew Fen Lisa, Sonntag, Carmen, Hardee, Justin P., Lynch, Gordon S., Miles, Lee B., Siegel, Ashley, Hall, Thomas E., Schittenhelm, Ralf B. and Currie, Peter D. (2024). Atrogin-1 promotes muscle homeostasis by regulating levels of endoplasmic reticulum chaperone BiP. JCI Insight. doi: 10.1172/jci.insight.167578

KBTBD13 is an actin-binding protein that modulates muscle kinetics

de Winter, Josine M., Molenaar, Joery P., Yuen, Michaela, van der Pijl, Robbert, Shen, Shengyi, Conijn, Stefan, van de Locht, Martijn, Willigenburg, Menne, Bogaards, Sylvia J.P., van Kleef, Esmee S.B., Lassche, Saskia, Persson, Malin, Rassier, Dilson E., Sztal, Tamar E., Ruparelia, Avnika A., Oorschot, Viola, Ramm, Georg, Hall, Thomas E., Xiong, Zherui, Johnson, Christopher N., Li, Frank, Kiss, Balazs, Lozano-Vidal, Noelia, Boon, Reinier A., Marabita, Manuela, Nogara, Leonardo, Blaauw, Bert, Rodenburg, Richard J., Küsters, Benno ... Ottenheijm, Coen A.C. (2024). KBTBD13 is an actin-binding protein that modulates muscle kinetics. Journal of Clinical Investigation, 134 (3). doi: 10.1172/jci179111

Cell surface plasticity in response to shape change in the whole organism

Hall, Thomas E., Ariotti, Nicholas, Lo, Harriet P., Rae, James, Ferguson, Charles, Martel, Nick, Lim, Ye-Wheen, Giacomotto, Jean and Parton, Robert G. (2023). Cell surface plasticity in response to shape change in the whole organism. Current Biology, 33 (19), 4276-4284.e4. doi: 10.1016/j.cub.2023.08.068

Optimising the zebrafish Cre/Lox toolbox. Codon improved iCre, new gateway tools, Cre protein and guidelines

Tromp, Alisha, Wang, Haitao, Hall, Thomas E., Mowry, Bryan and Giacomotto, Jean (2023). Optimising the zebrafish Cre/Lox toolbox. Codon improved iCre, new gateway tools, Cre protein and guidelines. Frontiers in Physiology, 14 1221310, 1-10. doi: 10.3389/fphys.2023.1221310

Caveolae sense oxidative stress through membrane lipid peroxidation and cytosolic release of CAVIN1 to regulate NRF2

Wu, Yeping, Lim, Ye-Wheen, Stroud, David A., Martel, Nick, Hall, Thomas E., Lo, Harriet P., Ferguson, Charles, Ryan, Michael T., McMahon, Kerrie-Ann and Parton, Robert G. (2023). Caveolae sense oxidative stress through membrane lipid peroxidation and cytosolic release of CAVIN1 to regulate NRF2. Developmental Cell, 58 (5), 376-397.e4. doi: 10.1016/j.devcel.2023.02.004

ahctf1 and kras mutations combine to amplify oncogenic stress and restrict liver overgrowth in a zebrafish model of hepatocellular carcinoma

Morgan, Kimberly J., Doggett, Karen, Geng, Fansuo, Mieruszynski, Stephen, Whitehead, Lachlan, Smith, Kelly A., Hogan, Benjamin M., Simons, Cas, Baillie, Gregory J., Molania, Ramyar, Papenfuss, Anthony T., Hall, Thomas E., Ober, Elke A., Stainier, Didier Y.R., Gong, Zhiyuan and Heath, Joan Kathleen (2023). ahctf1 and kras mutations combine to amplify oncogenic stress and restrict liver overgrowth in a zebrafish model of hepatocellular carcinoma. eLife, 12 e73407, 1-28. doi: 10.7554/elife.73407

Cavin4 interacts with Bin1 to promote T-tubule formation and stability in developing skeletal muscle

Lo, Harriet P., Lim, Ye-Wheen, Xiong, Zherui, Martel, Nick, Ferguson, Charles, Ariotti, Nicholas, Giacomotto, Jean, Rae, James, Floetenmeyer, Matthias, Moradi, Shayli Varasteh, Gao, Ya, Tillu, Vikas A., Xia, Di, Wang, Huang, Rahnama, Samira, Nixon, Susan J., Bastiani, Michele, Day, Ryan D., Smith, Kelly A., Palpant, Nathan J., Johnston, Wayne A., Alexandrov, Kirill, Collins, Brett M., Hall, Thomas E. and Parton, Robert G. (2021). Cavin4 interacts with Bin1 to promote T-tubule formation and stability in developing skeletal muscle. Journal of Cell Biology, 220 (12) e201905065. doi: 10.1083/jcb.201905065

Proximity dependent biotin labelling in zebrafish for proteome and interactome profiling

Xiong, Zherui, Lo, Harriet P., McMahon, Kerrie-Ann, Parton, Robert G. and Hall, Thomas E. (2021). Proximity dependent biotin labelling in zebrafish for proteome and interactome profiling. Bio-protocol, 11 (19) e4178, e4178. doi: 10.21769/BIOPROTOC.4178

Pipeline for generating stable large genomic deletions in zebrafish, from small domains to whole gene excisions

Tromp, Alisha, Robinson, Kate, Hall, Thomas E., Mowry, Bryan and Giacomotto, Jean (2021). Pipeline for generating stable large genomic deletions in zebrafish, from small domains to whole gene excisions. G3 Genes|Genomes|Genetics, 11 (12) jkab321. doi: 10.1093/g3journal/jkab321

Cavin3 released from caveolae interacts with BRCA1 to regulate the cellular stress response

McMahon, Kerrie-Ann, Stroud, David A., Gambin, Yann, Tillu, Vikas, Bastiani, Michele, Sierecki, Emma, Polinkovsky, Mark E., Hall, Thomas E., Gomez, Guillermo A., Wu, Yeping, Parat, Marie-Odile, Martel, Nick, Lo, Harriet P., Khanna, Kum Kum, Alexandrov, Kirill, Daly, Roger, Yap, Alpha, Ryan, Michael T. and Parton, Robert G. (2021). Cavin3 released from caveolae interacts with BRCA1 to regulate the cellular stress response. eLife, 10 e61407, 1-35. doi: 10.7554/elife.61407

A robust method for particulate detection of a genetic tag for 3D electron microscopy

Rae, James, Ferguson, Charles, Ariotti, Nicholas, Webb, Richard I., Cheng, Han-Hao, Mead, James L., Riches, James D., Hunter, Dominic J.B., Martel, Nick, Baltos, Joanne, Christopoulos, Arthur, Bryce, Nicole S., Cagigas, Maria Lastra, Fonseka, Sachini, Sayre, Marcel E., Hardeman, Edna C., Gunning, Peter W., Gambin, Yann, Hall, Thomas E. and Parton, Robert G. (2021). A robust method for particulate detection of a genetic tag for 3D electron microscopy. eLife, 10 e64630, 1-17. doi: 10.7554/eLife.64630

In vivo proteomic mapping through GFP-directed proximity-dependent biotin labelling in zebrafish

Xiong, Zherui, Lo, Harriet P., McMahon, Kerrie-Ann, Martel, Nick, Jones, Alun, Hill, Michelle M., Parton, Robert G. and Hall, Thomas E. (2021). In vivo proteomic mapping through GFP-directed proximity-dependent biotin labelling in zebrafish. eLife, 10 e64631, 1-21. doi: 10.7554/elife.64631

Mechanotransduction activates RhoA in the neighbors of apoptotic epithelial cells to engage apical extrusion

Duszyc, Kinga, Gomez, Guillermo A., Lagendijk, Anne K., Yau, Mei-Kwan, Nanavati, Bageshri Naimish, Gliddon, Briony L., Hall, Thomas E., Verma, Suzie, Hogan, Benjamin M., Pitson, Stuart M., Fairlie, David P., Parton, Robert G. and Yap, Alpha S. (2021). Mechanotransduction activates RhoA in the neighbors of apoptotic epithelial cells to engage apical extrusion. Current Biology, 31 (6), 1326-1336.e5. doi: 10.1016/j.cub.2021.01.003

In vivo Validation of Bimolecular Fluorescence Complementation (BiFC) to Investigate Aggregate Formation in Amyotrophic Lateral Sclerosis (ALS)

Don, Emily K., Maschirow, Alina, Radford, Rowan A. W., Scherer, Natalie M., Vidal-Itriago, Andrés, Hogan, Alison, Maurel, Cindy, Formella, Isabel, Stoddart, Jack J., Hall, Thomas E., Lee, Albert, Shi, Bingyang, Cole, Nicholas J., Laird, Angela S., Badrock, Andrew P., Chung, Roger S. and Morsch, Marco (2021). In vivo Validation of Bimolecular Fluorescence Complementation (BiFC) to Investigate Aggregate Formation in Amyotrophic Lateral Sclerosis (ALS). Molecular Neurobiology, 58 (5), 2061-2074. doi: 10.1007/s12035-020-02238-0

Src kinases relax adherens junctions between the neighbors of apoptotic cells to permit apical extrusion

Teo, Jessica L, Tomatis, Vanesa M, Coburn, Luke, Lagendijk, Anne K, Schouwenaar, Irin-Maya, Budnar, Srikanth, Hall, Thomas E, Verma, Suzie, McLachlan, Robert W, Hogan, Benjamin M, Parton, Robert G, Yap, Alpha S and Gomez, Guillermo A (2020). Src kinases relax adherens junctions between the neighbors of apoptotic cells to permit apical extrusion. Molecular Biology of the Cell, 31 (23), 2495-2629. doi: 10.1091/mbc.E20-01-0084

In vivo cell biological screening identifies an endocytic capture mechanism for T-tubule formation

Hall, Thomas E., Martel, Nick, Ariotti, Nicholas, Xiong, Zherui, Lo, Harriet P., Ferguson, Charles, Rae, James, Lim, Ye-Wheen and Parton, Robert G. (2020). In vivo cell biological screening identifies an endocytic capture mechanism for T-tubule formation. Nature Communications, 11 (1) 3711, 3711. doi: 10.1038/s41467-020-17486-w

Cellular rescue in a zebrafish model of congenital muscular dystrophy type 1A

Hall, T. E., Wood, A. J., Ehrlich, O., Li, M., Sonntag, C. S., Cole, N. J., Huttner, I. G., Sztal, T. E. and Currie, P. D. (2019). Cellular rescue in a zebrafish model of congenital muscular dystrophy type 1A. Npj Regenerative Medicine, 4 (1) 21, 21. doi: 10.1038/s41536-019-0084-5

KBTBD13 is an actin-binding protein that modulates muscle kinetics

de Winter, Josine M., Molenaar, Joery P., Yuen, Michaela, van der Pijl, Robbert, Shen, Shengyi, Conijn, Stefan, van de Locht, Martijn, Willigenburg, Menne, Bogaards, Sylvia J.P., van Kleef, Esmee S.B., Lassche, Saskia, Persson, Malin, Rassier, Dilson E., Sztal, Tamar E., Ruparelia, Avnika A., Oorschot, Viola, Ramm, Georg, Hall, Thomas E., Xiong, Zherui, Johnson, Christopher N., Li, Frank, Kiss, Balazs, Lozano-Vidal, Noelia, Boon, Reinier A., Marabita, Manuela, Nogara, Leonardo, Blaauw, Bert, Rodenburg, Richard J., Kϋsters, Benno ... Ottenheijm, Coen A.C. (2019). KBTBD13 is an actin-binding protein that modulates muscle kinetics. Journal of Clinical Investigation, 130 (2), 754-767. doi: 10.1172/jci124000

Identification of intracellular cavin target proteins reveals cavin-PP1alpha interactions regulate apoptosis

McMahon, Kerrie-Ann, Wu, Yeping, Gambin, Yann, Sierecki, Emma, Tillu, Vikas A., Hall, Thomas, Martel, Nick, Okano, Satomi, Moradi, Shayli Varasteh, Ruelcke, Jayde E., Ferguson, Charles, Yap, Alpha S., Alexandrov, Kirill, Hill, Michelle M. and Parton, Robert G. (2019). Identification of intracellular cavin target proteins reveals cavin-PP1alpha interactions regulate apoptosis. Nature Communications, 10 (1) 3279, 3279. doi: 10.1038/s41467-019-11111-1

Myosin Vb is required for correct trafficking of N-cadherin and cardiac chamber ballooning

Grassini, Daniela R., Da Silva, Jason, Hall, Thomas E., Baillie, Gregory J., Simons, Cas, Parton, Robert G., Hogan, Benjamin M. and Smith, Kelly A. (2019). Myosin Vb is required for correct trafficking of N-cadherin and cardiac chamber ballooning. Developmental Dynamics, 248 (4) dvdy.19, 284-295. doi: 10.1002/dvdy.19

Electron microscopic detection of proteins and protein complexes in mammalian cells using APEX-tagged, conditionally stable nanobodies

Hall, Thomas E., Rae, James, Ariotti, Nicholas and Parton, Robert G. (2018). Electron microscopic detection of proteins and protein complexes in mammalian cells using APEX-tagged, conditionally stable nanobodies. Bio-Protocol, 8 (22), e3088. doi: 10.21769/BioProtoc.3088

A variable undecad repeat domain in cavin1 regulates caveola formation and stability

Tillu, Vikas A., Lim, Ye-Wheen, Kovtun, Oleksiy, Mureev, Sergey, Ferguson, Charles, Bastiani, Michele, McMahon, Kerrie-Ann, Lo, Harriet P., Hall, Thomas E., Alexandrov, Kirill, Collins, Brett M. and Parton, Robert G. (2018). A variable undecad repeat domain in cavin1 regulates caveola formation and stability. EMBO Reports, 19 (9) e45775. doi: 10.15252/embr.201845775

Ultrastructural localisation of protein interactions using conditionally stable nanobodies

Ariotti, Nicholas, Rae, James, Giles, Nichole, Martel, Nick, Sierecki, Emma, Gambin, Yann, Hall, Thomas E. and Parton, Robert G. (2018). Ultrastructural localisation of protein interactions using conditionally stable nanobodies. PLoS Biology, 16 (4) e2005473, e2005473. doi: 10.1371/journal.pbio.2005473

Caveolae protect notochord cells against catastrophic mechanical failure during development

Lim, Ye-Wheen, Lo, Harriet P., Ferguson, Charles, Martel, Nick, Giacomotto, Jean, Gomez, Guillermo A., Yap, Alpha S., Hall, Thomas E. and Parton, Robert G. (2017). Caveolae protect notochord cells against catastrophic mechanical failure during development. Current Biology, 27 (13), 1968-1981.e7. doi: 10.1016/j.cub.2017.05.067

Muscle stem cells undergo extensive clonal drift during tissue growth via Meox1-mediated induction of G2 cell-cycle arrest

Nguyen, Phong Dang, Gurevich, David Baruch, Sonntag, Carmen, Hersey, Lucy, Alaei, Sara, Nim, Hieu Tri, Siegel, Ashley, Hall, Thomas Edward, Rossello, Fernando Jaime, Boyd, Sarah Elizabeth, Polo, Jose Maria and Currie, Peter David (2017). Muscle stem cells undergo extensive clonal drift during tissue growth via Meox1-mediated induction of G2 cell-cycle arrest. Cell Stem Cell, 21 (1), 107-119.e6. doi: 10.1016/j.stem.2017.06.003

Correlative light and electron microscopic detection of GFP-labeled proteins using modular APEX

Ariotti, Nicholas, Hall, Thomas E. and Parton, Robert G. (2017). Correlative light and electron microscopic detection of GFP-labeled proteins using modular APEX. Methods in Cell Biology, 140, 105-121. doi: 10.1016/bs.mcb.2017.03.002

A plasmid library of full-length zebrafish rab proteins forcell biology

Hall, Thomas E., Martel, Nick, Lo, Harriet P., Xiong, Zherui and Parton, Robert G. (2017). A plasmid library of full-length zebrafish rab proteins forcell biology. Cellular Logistics, 7 (1), 1-5. doi: 10.1080/21592799.2017.1301151

A Tol2 gateway-compatible toolbox for the study of the nervous system and neurodegenerative disease

Don, Emily K., Formella, Isabel, Badrock, Andrew P., Hall, Thomas E., Morsch, Marco, Hortle, Elinor, Hogan, Alison, Chow, Sharron, Gwee, Serene S. L., Stoddart, Jack J., Nicholson, Garth , Chung, Roger and Cole, Nicholas J. (2017). A Tol2 gateway-compatible toolbox for the study of the nervous system and neurodegenerative disease. Zebrafish, 14 (1), 69-72. doi: 10.1089/zeb.2016.1321

A somitic contribution to the apical ectodermal ridge is essential for fin formation

Masselink, Wouter, Cole, Nicholas J., Fenyes, Fruzsina, Berger, Silke, Sonntag, Carmen, Wood, Alasdair, Nguyen, Phong D., Cohen, Naomi, Knopf, Franziska, Weidinger, Gilbert, Hall, Thomas E. and Currie, Peter D. (2016). A somitic contribution to the apical ectodermal ridge is essential for fin formation. Nature, 535 (7613), 542-546. doi: 10.1038/nature18953

Asymmetric division of clonal muscle stem cells coordinates muscle regeneration in vivo

Gurevich, David B., Nguyen, Phong Dang, Siegel, Ashley L., Ehrlich, Ophelia V., Sonntag, Carmen, Phan, Jennifer M. N., Berger, Silke, Ratnayake, Dhanushika, Hersey, Lucy, Berger, Joachim, Verkade, Heather, Hall, Thomas E. and Currie, Peter D. (2016). Asymmetric division of clonal muscle stem cells coordinates muscle regeneration in vivo. Science, 353 (6295) aad9969, aad9969-aad9969. doi: 10.1126/science.aad9969

New transgenic lines for localization of GFP-tagged proteins by electron microscope

Hall, Thomas, Ariotti, Nicholas, Ferguson, Charles, Zherui, Xiong and Parton, Robert G. (2016). New transgenic lines for localization of GFP-tagged proteins by electron microscope. Zebrafish, 13 (3), 232-233. doi: 10.1089/zeb.2016.29002.hal

Genetic basis of hindlimb loss in a naturally occurring vertebrate model

Don, Emily K., de Jong-Curtain, Tanya A., Doggett, Karen, Hall, Thomas E., Heng, Benjamin, Badrock, Andrew P., Winnick, Claire, Nicholson, Garth A., Guillemin, Gilles J., Currie, Peter D., Hesselson, Daniel, Heath, Joan K. and Cole, Nicholas J. (2016). Genetic basis of hindlimb loss in a naturally occurring vertebrate model. Biology Open, 5 (3), 359-366. doi: 10.1242/bio.016295

Mechanoprotection by skeletal muscle caveolae

Lo, Harriet P., Hall, Thomas E. and Parton, Robert G. (2016). Mechanoprotection by skeletal muscle caveolae. BioArchitecture, 6 (1), 22-27. doi: 10.1080/19490992.2015.1131891

Modular detection of GFP-labeled proteins for rapid screening by electron microscopy in cells and organisms

Ariotti, Nicholas, Hall, Thomas, Rae, James, Ferguson, Charles, McMahon, Kerrie-Ann, Martel, Nick, Webb, Robyn E., Webb, Richard I., Teasdale, Rohan D. and Parton, Robert G. (2015). Modular detection of GFP-labeled proteins for rapid screening by electron microscopy in cells and organisms. Developmental Cell, 35 (4), 513-525. doi: 10.1016/j.devcel.2015.10.016

The caveolin–cavin system plays a conserved and critical role in mechanoprotection of skeletal muscle

Lo, Harriet P., Nixon, Susan Jane, Hall, Thomas Edward, Cowling, Belinda Simone, Ferguson, Charles, Morgan, Garry Patrick, Schieber, Nicole Louise, Fernandez-Rojo, Manuel Alejandro, Bastiani, Michele, Floetenmeyer, Matthias, Martel, Nick, Laporte, Jocelyn, Pilch, Paul F. and Parton, Robert (2015). The caveolin–cavin system plays a conserved and critical role in mechanoprotection of skeletal muscle. The Journal of Experimental Medicine, 212 (10), 833-849. doi: 10.1084/jem.21210oia80

In vivo characterization of microglial engulfment of dying neurons in the zebrafish spinal cord

Morsch, Marco, Radford, Rowan, Lee, Albert, Don, Emily K., Bedrock, Andrew P., Hall, Thomas E., Cole, Nicholas J. and Chung, Roger (2015). In vivo characterization of microglial engulfment of dying neurons in the zebrafish spinal cord. Frontiers in Cellular Neuroscience, 9 (August) 321, 321-321. doi: 10.3389/fncel.2015.00321

The caveolin-cavin system plays a conserved and critical role in mechanoprotection of skeletal muscle

Lo, Harriet P., Nixon, Susan J., Hall, Thomas E., Cowling, Belinda S., Ferguson, Charles, Morgan, Garry P., Schieber, Nicole L., Fernandez-Rojo, Manuel A., Bastiani, Michele, Floetenmeyer, Matthias, Martel, Nick, Laporte, Jocelyn, Pilch, Paul F. and Parton, Robert G. (2015). The caveolin-cavin system plays a conserved and critical role in mechanoprotection of skeletal muscle. Journal of Cell Biology, 210 (5), 833-849. doi: 10.1083/jcb.201501046

Zebrafish models for nemaline myopathy reveal a spectrum of nemaline bodies contributing to reduced muscle function

Sztal, Tamar E., Zhao, Mo, Williams, Caitlin, Oorschot, Viola, Parslow, Adam C., Giousoh, Aminah, Yuen, Michaela, Hall, Thomas E., Costin, Adam, Ramm, Georg, Bird, Phillip I., Busch-Nentwich, Elisabeth M., Stemple, Derek L., Currie, Peter D., Cooper, Sandra T., Laing, Nigel G., Nowak, Kristen J. and Bryson-Richardson, Robert J. (2015). Zebrafish models for nemaline myopathy reveal a spectrum of nemaline bodies contributing to reduced muscle function. Acta Neuropathologica, 130 (3), 389-406. doi: 10.1007/s00401-015-1430-3

Novel transgenic lines to label sarcolemma and myofibrils of the musculature

Berger, Joachim, Hall, Thomas E. and Currie, Peter D. (2015). Novel transgenic lines to label sarcolemma and myofibrils of the musculature. Zebrafish, 12 (1), 124-125. doi: 10.1089/zeb.2014.1065

Loss of tropomodulin4 in the zebrafish mutant träge causes cytoplasmic rod formation and muscle weakness reminiscent of nemaline myopathy

Berger, Joachim, Tarakci, Hakan, Berger, Silke, Li, Mei, Hall, Thomas E., Arner, Anders and Currie, Peter D. (2014). Loss of tropomodulin4 in the zebrafish mutant träge causes cytoplasmic rod formation and muscle weakness reminiscent of nemaline myopathy. DMM Disease Models and Mechanisms, 7 (12), 1407-1415. doi: 10.1242/dmm.017376

Haematopoietic stem cell induction by somite-derived endothelial cells controlled by meox1

Nguyen, Phong Dang, Hollway, Georgina Elizabeth, Sonntag, Carmen, Miles, Lee Barry, Hall, Thomas Edward, Berger, Silke, Fernandez, Kristine Joy, Gurevich, David Baruch, Cole, Nicholas James, Alaei, Sara, Ramialison, Mirana, Sutherland, Robert Lyndsay, Polo, Jose Maria, Lieschke, Graham John and Currie, Peter David (2014). Haematopoietic stem cell induction by somite-derived endothelial cells controlled by meox1. Nature, 512 (7514), 314-318. doi: 10.1038/nature13678

Mutant human FUS is ubiquitously mislocalized and generates persistent stress granules in primary cultured transgenic zebrafish cells

Acosta, Jamie Rae, Goldsbury, Claire, Winnick, Claire, Badrock, Andrew P., Fraser, Stuart T., Laird, Angela S., Hall, Thomas E., Don, Emily K., Fifita, Jennifer A., Blair, Ian P., Nicholson, Garth A. and Cole, Nicholas J. (2014). Mutant human FUS is ubiquitously mislocalized and generates persistent stress granules in primary cultured transgenic zebrafish cells. PLoS One, 9 (6) e90572, e90572.1-e90572.9. doi: 10.1371/journal.pone.0090572

Epistatic dissection of laminin–receptor interactions in dystrophic zebrafish muscle

Sztal, Tamar E., Sonntag, Carmen, Hall, Thomas E. and Currie, Peter D. (2012). Epistatic dissection of laminin–receptor interactions in dystrophic zebrafish muscle. Human Molecular Genetics, 21 (21) dds312, 4718-4731. doi: 10.1093/hmg/dds312

A splice site mutation in Laminin-α2 results in a severe muscular dystrophy and growth abnormalities in Zebrafish

Gupta, Vandana A., Kawahara, Genri, Myers, Jennifer A., Chen, Aye T., Hall, Thomas E., Manzini, M. Chiara, Currie, Peter D., Zhou, Yi, Zon, Leonard I., Kunkel, Louis M. and Beggs, Alan H. (2012). A splice site mutation in Laminin-α2 results in a severe muscular dystrophy and growth abnormalities in Zebrafish. PLoS One, 7 (8) e43794, e43794.1-e43794.9. doi: 10.1371/journal.pone.0043794

Scube activity is necessary for Hedgehog signal transduction in vivo

Johnson, Jacque-Lynne F. A., Hall, Thomas E., Dyson, Jennifer M., Sonntag, Carmen, Ayers, Katie, Berger, Silke, Gautier, Philippe, Mitchell, Christina, Hollway, Georgina E. and Currie, Peter D. (2012). Scube activity is necessary for Hedgehog signal transduction in vivo. Developmental Biology, 368 (2), 193-202. doi: 10.1016/j.ydbio.2012.05.007

Fgf-dependent glial cell bridges facilitate spinal cord regeneration in Zebrafish

Goldshmit, Yona, Sztal, Tamar E., Jusuf, Patricia R., Hall, Thomas E., Nguyen-Chi, Mai and Currie, Peter D. (2012). Fgf-dependent glial cell bridges facilitate spinal cord regeneration in Zebrafish. Journal of Neuroscience, 32 (22), 7477-7492. doi: 10.1523/JNEUROSCI.0758-12.2012

Morphogenesis and Cell Fate Determination within the Adaxial Cell Equivalence Group of the Zebrafish Myotome

Nguyen-Chi, Mai E., Bryson-Richardson, Robert, Sonntag, Carmen, Hall, Thomas E., Gibson, Abigail, Szta,l Tamar, Chua, Wendy, Schilling, Thomas F. and Currie, Peter D. (2012). Morphogenesis and Cell Fate Determination within the Adaxial Cell Equivalence Group of the Zebrafish Myotome. PLoS Genetics, 8 (10) e1003014, e1003014.1-e1003014.16. doi: 10.1371/journal.pgen.1003014

Development and evolution of the muscles of the pelvic fin

Cole, Nicholas J., Hall, Thomas E., Don, Emily K., Berger, Silke, Boisvert, Catherine A., Neyt, Christine, Ericsson, Rolf, Joss, Jean, Gurevich, David B. and Currie, Peter D. (2011). Development and evolution of the muscles of the pelvic fin. PLoS Biology, 9 (10) e1001168, 1-10. doi: 10.1371/journal.pbio.1001168

The in vivo performance of an enzyme-assisted self-assembled peptide/protein hydrogel

Williams, Richard J., Hall, Thomas E., Glattauer, Veronica, White, Jacinta, Pasic, Paul J., Sorensen, Anders B., Waddington, Lynne, McLean, Keith M., Currie, Peter D. and Hartley, Patrick G. (2011). The in vivo performance of an enzyme-assisted self-assembled peptide/protein hydrogel. Biomaterials, 32 (22), 5304-5310. doi: 10.1016/j.biomaterials.2011.03.078

Morphology of pelvic fin loss in a zebrafish strain (Danio rerio)

Don, Emily K., Hall, Thomas E., Currie, Peter D. and Cole, Nicholas J. (2011). Morphology of pelvic fin loss in a zebrafish strain (Danio rerio). Journal of Morphology, 272 (5), 583-589. doi: 10.1002/jmor.10938

Characterization of the laminin gene family and evolution in zebrafish

Sztal, Tamar, Berger, Silke, Currie, Peter D. and Hall, Thomas E. (2011). Characterization of the laminin gene family and evolution in zebrafish. Developmental Dynamics, 240 (2), 422-431. doi: 10.1002/dvdy.22537

Dystrophin-deficient zebrafish feature aspects of the Duchenne muscular dystrophy pathology

Berger, Joachim, Berger, Silke, Hall, Thomas E., Lieschke, Graham J. and Currie, Peter D. (2010). Dystrophin-deficient zebrafish feature aspects of the Duchenne muscular dystrophy pathology. Neuromuscular Disorders, 20 (12), 826-832. doi: 10.1016/j.nmd.2010.08.004

The zebrafish dystrophic mutant softy maintains muscle fibre viability despite basement membrane rupture and muscle detachment

Jacoby, Arie S., Busch-Nentwich, Elisabeth, Bryson-Richardson, Robert J., Hall, Thomas E., Berger, Joachim, Berger, Silke, Sonntag, Carmen, Sachs, Caroline, Geisler, Robert, Stemple, Derek L. and Currie, Peter D. (2009). The zebrafish dystrophic mutant softy maintains muscle fibre viability despite basement membrane rupture and muscle detachment. Development, 136 (19), 3367-3376. doi: 10.1242/dev.034561

FishNet: An online database of zebrafish anatomy

Bryson-Richardson, Robert J., Berger, Silke, Schilling, Thomas F., Hall, Thomas E., Cole, Nicholas J., Gibson, Abigail J., Sharpe, James and Currie, Peter D. (2007). FishNet: An online database of zebrafish anatomy. BMC Biology, 5 (1) 34, 34.1-34.8. doi: 10.1186/1741-7007-5-34

The zebrafish candyfloss mutant implicates extracellular matrix adhesion failure in laminin α2-deficient congential muscular dystrophy

Hall, Thomas E., Bryson-Richardson, Robert J., Berger, Silke, Jacoby, Arie S., Cole, Nicholas J., Hollway, Georgina E., Berger, Joachim and Currie, Peter D. (2007). The zebrafish candyfloss mutant implicates extracellular matrix adhesion failure in laminin α2-deficient congential muscular dystrophy. Proceedings of the National Academy of Sciences, 104 (17), 7092-7097. doi: 10.1073/pnas.0700942104

Whole-somite rotation generates muscle progenitor cell compartments in the developing zebrafish embryo

Hollway, Georgina E., Bryson-Richardson, Robert J., Berger, Silke, Cole, Nicholas J., Hall, Thomas E. and Currie, Peter D. (2007). Whole-somite rotation generates muscle progenitor cell compartments in the developing zebrafish embryo. Developmental Cell, 12 (2), 207-219. doi: 10.1016/j.devcel.2007.01.001

Mechanisms of muscle development and responses to temperature change in fish larvae

Johnston, Ian A. and Hall, Thomas E. (2004). Mechanisms of muscle development and responses to temperature change in fish larvae. American Fisheries Society Symposium, 2004 (40), 85-116.

Temperature and the expression of myogenic regulatory factors (MRFs) and myosin heavy chain isoforms during embryogenesis in the common carp Cyprinus carpio L.

Cole, Nicholas J., Hall, Thomas, Martin, Christopher I., Chapman, Mark A., Kobiyama, Atsushi, Nihei, Yoshiaki, Watabe, Shugo and Johnston, Ian A. (2004). Temperature and the expression of myogenic regulatory factors (MRFs) and myosin heavy chain isoforms during embryogenesis in the common carp Cyprinus carpio L.. The Journal of Experimental Biology, 207 (24), 4239-4248. doi: 10.1242/jeb.01263

Stages of embryonic development in the Atlantic cod Gadus morhua

Hall, Thomas E., Smith, Peter and Johnston, Ian A. (2004). Stages of embryonic development in the Atlantic cod Gadus morhua. Journal of Morphology, 259 (3), 255-270. doi: 10.1002/jmor.10222

Temperature and developmental plasticity during embryogenesis in the Atlantic cod Gadus morhua L.

Hall, Thomas E. and Johnston, Ian A. (2003). Temperature and developmental plasticity during embryogenesis in the Atlantic cod Gadus morhua L.. Marine Biology, 142 (5), 833-840. doi: 10.1007/s00227-003-1030-y

Temperature and the expression of seven muscle-specific protein genes during embryogenesis in the Atlantic cod Gadus morhua L.

Hall, Thomas E., Cole, N. J. and Johnston, I, A. (2003). Temperature and the expression of seven muscle-specific protein genes during embryogenesis in the Atlantic cod Gadus morhua L.. The Journal of Experimental Biology, 206 (18), 3187-3200. doi: 10.1242/jeb.00535

Muscle stem cells and regeneration in zebrafish models of muscular dystrophies

Hall, T. E., Bryson-Richardson, R. J., Cole, N. J. and Currie, P. D. (2005). Muscle stem cells and regeneration in zebrafish models of muscular dystrophies. ELSEVIER SCIENCE BV.

Mechanisms of muscle development and responses to temperature change in fish larvae

Johnston, IA and Hall, TE (2004). Mechanisms of muscle development and responses to temperature change in fish larvae. Symposium on Development of Form and Function in Fishes and the Question of Larval Adaptation, Bergen Norway, Jul, 2002. AMER FISHERIES SOC.

Genes regulating the growth of myotomal muscle in teleost fish

Johnston, IA, Hall, TE and Fernandez, DA (2003). Genes regulating the growth of myotomal muscle in teleost fish. 1st Aquatic Genomics Symposium, Tokyo Japan, Nov, 2000. SPRINGER-VERLAG TOKYO.

A role for caveolar proteins in regulation of the circadian clock

Fonseka, Sachini, Weger, Benjamin D., Weger, Meltem, Martel, Nick, Hall, Thomas Edward, Varasteh Moradi, Shayli, Gabriel, Christian H., Kramer, Achim, Ferguson, Charles, Fernández-Rojo, Manuel A., Alexandrov, Kirill, Rawashdeh, Oliver, McMahon, Kerrie-Ann, Gachon, Frederic and Parton, Robert G. (2022). A role for caveolar proteins in regulation of the circadian clock.