The University of Queensland

Sample preparation for culture-independent profiling and isolation of phyllosphere bacteria to identify potential biopesticides

Singh, Eugenie, Schenk, Peer M. and Carvalhais, Lilia C. (2021). Sample preparation for culture-independent profiling and isolation of phyllosphere bacteria to identify potential biopesticides. Methods in Molecular Biology. (pp. 193-208) New York, NY, United States: Humana Press. doi: 10.1007/978-1-0716-1040-4_16

Emerging culture-independent tools to enhance our understanding of soil microbial ecology

Liu, Hongwei, Mirzaee, Hooman, Rincon-Florez, Vivian, Moyle, Richard, Spohn, Marie, Carvalhais, Lilia C. and Schenk, Peer M. (2017). Emerging culture-independent tools to enhance our understanding of soil microbial ecology. Microbial Biomass. (pp. 207-225) edited by Kevin R. Tate. Hackensack, NJ United States: World Scientific Publishing. doi: 10.1142/9781786341310_0008

Toward plant defense mechanisms against root pathogens

Fallath, Thorya, Rosli, Ahmad Bin, Kidd, Brendan, Carvalhais, Lilia C. and Schenk, Peer M. (2017). Toward plant defense mechanisms against root pathogens. Agriculturally Important Microbes for Sustainable Agriculture Volume 2: Applications in Crop Production and Protection. (pp. 293-313) edited by Vijay Singh Meena, Pankaj Kumar Mishra, Jaideep Kumar Bisht and Arunava Pattanayak. Gateway East, Singapore : Springer. doi: 10.1007/978-981-10-5343-6_10

Soil microbial community interactions under tillage systems in Australia

Rincon-Florez, Vivian A., Carvalhais, Lilia C., Dang, Yash P. and Schenk, Peer M. (2016). Soil microbial community interactions under tillage systems in Australia. Plant, Soil and Microbes: Volume 1: Implications in Crop Science. (pp. 93-102) edited by Khalid Rehman Hakeem, Mohd Sayeed Akhtar and Siti Nor Akmar Abdullah. Cham, Switzerland: Springer. doi: 10.1007/978-3-319-27455-3_5

Soil functional gene microarrays and applications in plant-microbe interactions

Carvalhais, Lilia C., Rincon-Florez, Vivian and Schenk, Peer M. (2014). Soil functional gene microarrays and applications in plant-microbe interactions. Microarrays: current technology, innovations and applications. (pp. 169-180) edited by Zhili He. Norfolk, United Kingdom: Caister Academic Press.

Rhizosphere Metatranscriptomics: Challenges and Opportunities

Carvalhais, Lilia C., Dennis, Paul G., Tyson, Gene W. and Schenk, Peer M. (2013). Rhizosphere Metatranscriptomics: Challenges and Opportunities. Molecular Microbial Ecology of the Rhizosphere. (pp. 1137-1144) edited by Frans J. de Bruijn. Hoboken, NJ United States: Wiley-Blackwell. doi: 10.1002/9781118297674.ch109

Effect of plant species and mycorrhizal inoculation on soil phosphate-solubilizing microorganisms in semi-arid Brazil: Growth promotion effect of rhizospheric phosphate-solubilizing microorganisms on Eucalyptus camaldulensis

Scotti, M. R., Sa, N., Marriel, I., Carvalhais, L. C., Matias, S. R., Correa, E. J., Freitas, N., Sugai, M. A. and Pagano, M. C. (2007). Effect of plant species and mycorrhizal inoculation on soil phosphate-solubilizing microorganisms in semi-arid Brazil: Growth promotion effect of rhizospheric phosphate-solubilizing microorganisms on Eucalyptus camaldulensis. First International Meeting on Microbial Phosphate Solubilization. (pp. 167-172) edited by E. Velazquez and C. Rodriguez-Barrueco. Dordrecht, The Netherlands: Springer.

Diagnostics of Fusarium wilt in banana: Current status and challenges

Roberts, Janet M., Carvalhais, Lilia C., O'Dwyer, Cecilia, Rincón‐Flórez, Vivian A. and Drenth, Andre (2024). Diagnostics of Fusarium wilt in banana: Current status and challenges. Plant Pathology. doi: 10.1111/ppa.13863

Customized plant microbiome engineering for food security

Batool, Maria, Carvalhais, Lilia C., Fu, Brendan and Schenk, Peer M. (2023). Customized plant microbiome engineering for food security. Trends in Plant Science. doi: 10.1016/j.tplants.2023.10.012

Rhizosphere Bacteria Biofertiliser Formulations Improve Lettuce Growth and Yield under Nursery and field conditions

Shao, Ziyu, Arkhipov, Alexander, Batool, Maria, Muirhead, Sean R., Harry, Muchineripi S., Ji, Xuan, Mirzaee, Hooman, Carvalhais, Lilia C. and Schenk, Peer M. (2023). Rhizosphere Bacteria Biofertiliser Formulations Improve Lettuce Growth and Yield under Nursery and field conditions. Agriculture, 13 (10) 1911, 1911. doi: 10.3390/agriculture13101911

PGPR control Phytophthora capsici in tomato through induced systemic resistance, early hypersensitive response and direct antagonism in a cultivar-specific manner

Arkhipov, Alexander, Carvalhais, Lilia C. and Schenk, Peer M. (2023). PGPR control Phytophthora capsici in tomato through induced systemic resistance, early hypersensitive response and direct antagonism in a cultivar-specific manner. European Journal of Plant Pathology, 167 (4), 811-832. doi: 10.1007/s10658-023-02734-8

Divergent rainforest tree microbiomes between phases of the monsoon cycle, host plants and tissues

Calvert, J., McTaggart, A., Carvalhais, L. C., Rensink, S., Dennis, P. G., Drenth, A. and Shivas, R. (2023). Divergent rainforest tree microbiomes between phases of the monsoon cycle, host plants and tissues. Plant Biology, 25 (6), 860-870. doi: 10.1111/plb.13569

Rhizosphere bacteria induce programmed cell death defence genes and signalling in chilli pepper

Syed-Ab-Rahman, Sharifah Farhana, Arkhipov, Alexander, Wass, Taylor J., Xiao, Yawen, Carvalhais, Lilia C. and Schenk, Peer M. (2022). Rhizosphere bacteria induce programmed cell death defence genes and signalling in chilli pepper. Journal of Applied Microbiology, 132 (4), 3111-3124. doi: 10.1111/jam.15456

Susceptibility of the banana inflorescence to Blood disease

Ray, Jane, Subandiyah, Siti, Rincon-Florez, Vivian Andrea, Prakoso, Ady Bayu, Carvalhais, Lilia and Drenth, Andre (2022). Susceptibility of the banana inflorescence to Blood disease. Phytopathology®, 112 (4), 803-810. doi: 10.1094/phyto-07-21-0311-r

Diagnostics of banana Blood disease

Rincon-Florez, Vivian A, Ray, Jane D, Carvalhais, Lilia Costa, O'Dwyer, Cecilia A, Subandiyah, Siti, Zulperi, Dzarifah and Drenth, Andre (2022). Diagnostics of banana Blood disease. Plant Disease, 106 (3), 947-959. doi: 10.1094/pdis-07-21-1436-re

Transmission of blood disease in banana

Ray, Jane Denise, Subandiyah, Siti, Prakoso, Ady B., Rincon-Florez, Vivian A., Carvalhais, Lilia Costa and Drenth, Andre (2022). Transmission of blood disease in banana. Plant Disease, 106 (8), PDIS10212373RE-2164. doi: 10.1094/pdis-10-21-2373-re

Geographic expansion of banana blood disease in Southeast Asia

Ray, Jane D., Subandiyah, Siti, Rincon-Florez, Vivian A., Prakoso, Ady B., Mudita, I. W., Carvalhais, Lilia C., Markus, Jenny E. R., O’Dwyer, Cecilia A. and Drenth, André (2021). Geographic expansion of banana blood disease in Southeast Asia. Plant Disease, 105 (10), 2792-2800. doi: 10.1094/pdis-01-21-0149-re

Simple solution to preserve plant samples for microbiome analyses

Carvalhais, Lilia C., Dennis, Paul G., Poudel, Amrit, Birt, Henry W. G., Bhuiyan, Shamsul A., Card, Stuart D. and Joyce, Priya A. (2021). Simple solution to preserve plant samples for microbiome analyses. Molecular Ecology Resources, 22 (3), 1055-1064. doi: 10.1111/1755-0998.13538

Plant-produced bacteriocins inhibit plant pathogens and confer disease resistance in tomato

Mirzaee, Hooman, Neira Peralta, Noelia L., Carvalhais, Lilia C., Dennis, Paul G. and Schenk, Peer M. (2021). Plant-produced bacteriocins inhibit plant pathogens and confer disease resistance in tomato. New Biotechnology, 63, 54-61. doi: 10.1016/j.nbt.2021.03.003

Evidence for the plant recruitment of beneficial microbes to suppress soil‐borne pathogens

Liu, Hongwei, Li, Jiayu, Carvalhais, Lilia C., Percy, Cassandra D., Prakash Verma, Jay, Schenk, Peer M. and Singh, Brajesh K. (2021). Evidence for the plant recruitment of beneficial microbes to suppress soil‐borne pathogens. New Phytologist, 229 (5), 2873-2885. doi: 10.1111/nph.17057

Preface

Carvalhais, Lilia C. and Dennis, Paul G. (2021). Preface. Methods in Molecular Biology, 2232, v-vi. doi: 10.4337/9781784714802.00005

Draft genome of the macadamia husk spot pathogen, Pseudocercospora macadamiae

Akinsanmi, Olufemi A. and Carvalhais, Lilia C. (2020). Draft genome of the macadamia husk spot pathogen, Pseudocercospora macadamiae. Phytopathology®, 110 (9), PHYTO12190460A-12. doi: 10.1094/phyto-12-19-0460-a

Significant effects on soil microbial communities were not detected after strategic tillage following 44 years of conventional or no-tillage management

Rincon-Florez, Vivian A., Carvalhais, Lilia C., Dang, Yash P., Crawford, Mark H., Schenk, Peer M. and Dennis, Paul G. (2020). Significant effects on soil microbial communities were not detected after strategic tillage following 44 years of conventional or no-tillage management. Pedobiologia, 80 150640, 150640. doi: 10.1016/j.pedobi.2020.150640

Development of plant-based emulsion formulations to control bacterial leaf blight and sheath brown rot of rice

Syed-Ab-Rahman, Sharifah Farhana, Carvalhais, Lilia Costa and Omar, Dzolkhifli (2020). Development of plant-based emulsion formulations to control bacterial leaf blight and sheath brown rot of rice. Heliyon, 6 (1) e03151, e03151. doi: 10.1016/j.heliyon.2019.e03151

Fungal planet description sheets: 1112–1181

Crous, P. W., Cowan, D. A., Maggs-Kölling, G., Yilmaz, N., Larsson, E., Angelini, C., Brandrud, T. E., Dearnaley, J. D.W., Dima, B., Dovana, F., Fechner, N., García, D., Gené, J., Halling, R. E., Houbraken, J., Leonard, P., Luangsa-Ard, J. J., Noisripoom, W., Rea-Ireland, A. E., Ševčíková, H., Smyth, C. W., Vizzini, A., Adam, J. D., Adams, G. C., Alexandrova, A. V., Alizadeh, A., Álvarez Duarte, E., Andjic, V., Antonín, V. ... Groenewald, J. Z. (2020). Fungal planet description sheets: 1112–1181. Persoonia: Molecular Phylogeny and Evolution of Fungi, 45 (1), 251-409. doi: 10.3767/persoonia.2020.45.10

Soil bacterial diffusible and volatile organic compounds inhibit Phytophthora capsici and promote plant growth

Syed-Ab-Rahman, Sharifah Farhana, Carvalhais, Lilia C., Chua, Elvis T., Chung, Fong Yi, Moyle, Peter M., Eltanahy, Eladl G. and Schenk, Peer M. (2019). Soil bacterial diffusible and volatile organic compounds inhibit Phytophthora capsici and promote plant growth. Science of the Total Environment, 692, 267-280. doi: 10.1016/j.scitotenv.2019.07.061

Molecular diagnostics of banana Fusarium wilt targeting secreted-in-xylem genes

Carvalhais, Lilia C., Henderson, Juliane, Rincon-Florez, Vivian A., O'Dwyer, Cecilia, Czislowski, Elizabeth, Aitken, Elizabeth A. B. and Drenth, Andre (2019). Molecular diagnostics of banana Fusarium wilt targeting secreted-in-xylem genes. Frontiers in Plant Science, 10 547, 547. doi: 10.3389/fpls.2019.00547

Soil amendments with ethylene precursor alleviate negative impacts of salinity on soil microbial properties and productivity

Liu, Hongwei, Khan, Muhammad Yahya, Carvalhais, Lilia C., Delgado-Baquerizo, Manuel, Yan, Lijuan, Crawford, Mark, Dennis, Paul G., Singh, Brajesh and Schenk, Peer M. (2019). Soil amendments with ethylene precursor alleviate negative impacts of salinity on soil microbial properties and productivity. Scientific Reports, 9 (1) 6892, 6892. doi: 10.1038/s41598-019-43305-4

Complete genome sequence of Achromobacter spanius UQ283, a soilborne isolate exhibiting plant growth-promoting properties

Wass, Taylor J., Syed-Ab-Rahman, Sharifah Farhana, Carvalhais, Lilia C., Ferguson, Brett J. and Schenk, Peer M. (2019). Complete genome sequence of Achromobacter spanius UQ283, a soilborne isolate exhibiting plant growth-promoting properties. Microbiology Resource Announcements, 8 (16) e00236-19. doi: 10.1128/mra.00236-19

Suppression of Phytophthora capsici infection and promotion of tomato growth by soil bacteria

Syed-Ab-Rahman, Sharifah Farhana, Xiao, Yawen, Carvalhais, Lilia C., Ferguson, Brett J. and Schenk, Peer M. (2019). Suppression of Phytophthora capsici infection and promotion of tomato growth by soil bacteria. Rhizosphere, 9, 72-75. doi: 10.1016/j.rhisph.2018.11.007

The ability of plants to produce strigolactones affects rhizosphere community composition of fungi but not bacteria

Carvalhais, Lilia C., Rincon-Florez, Vivian A., Brewer, Philip B., Beveridge, Christine A., Dennis, Paul G. and Schenk, Peer M. (2019). The ability of plants to produce strigolactones affects rhizosphere community composition of fungi but not bacteria. Rhizosphere, 9, 18-26. doi: 10.1016/j.rhisph.2018.10.002

Identification of soil bacterial isolates suppressing different Phytophthora spp. and promoting plant growth

Syed-Ab-Rahman, Sharifah Farhana, Carvalhais, Lilia C., Chua, Elvis, Xiao, Yawen, Wass, Taylor J. and Schenk, Peer M. (2018). Identification of soil bacterial isolates suppressing different Phytophthora spp. and promoting plant growth. Frontiers in Plant Science, 9 1502, 1502. doi: 10.3389/fpls.2018.01502

Activation of the salicylic acid signalling pathway in wheat had no significant short-term impact on the diversity of root-associated microbiomes

Liu, Hongwei, Carvalhais, Lilia C., Schenk, Peer M. and Dennis, Paul G. (2018). Activation of the salicylic acid signalling pathway in wheat had no significant short-term impact on the diversity of root-associated microbiomes. Pedobiologia, 70, 6-11. doi: 10.1016/j.pedobi.2018.08.001

Inner plant values: Diversity, colonization and benefits from endophytic bacteria

Liu, Hongwei, Carvalhais, Lilia C., Crawford, Mark, Singh, Eugenie, Dennis, Paul G., Pieterse, Corné M.J. and Schenk, Peer M. (2017). Inner plant values: Diversity, colonization and benefits from endophytic bacteria. Frontiers in Microbiology, 8 (DEC) 2552, 2552. doi: 10.3389/fmicb.2017.02552

Complete Nucleotide Sequence of Australian Tomato spotted wilt virus Isolate TSWV-QLD2

Moyle, Richard L, Pretorius, Lara, Carvalhais, Lilia C and Schenk, Peer M (2017). Complete Nucleotide Sequence of Australian Tomato spotted wilt virus Isolate TSWV-QLD2. Genome announcements, 5 (47) e01267-17. doi: 10.1128/genomeA.01267-17

An Optimized Transient Dual Luciferase Assay for Quantifying MicroRNA Directed Repression of Targeted Sequences

Moyle, Richard L., Carvalhais, Lilia C., Pretorius, Lara-Simone, Nowak, Ekaterina, Subramaniam, Gayathery, Dalton-Morgan, Jessica and Schenk, Peer M. (2017). An Optimized Transient Dual Luciferase Assay for Quantifying MicroRNA Directed Repression of Targeted Sequences. Frontiers in Plant Science, 8 1631, 1631. doi: 10.3389/fpls.2017.01631

Jasmonic acid signalling and the plant holobiont

Carvalhais, Lilia C., Schenk, Peer M. and Dennis, Paul G. (2017). Jasmonic acid signalling and the plant holobiont. Current Opinion in Microbiology, 37, 42-47. doi: 10.1016/j.mib.2017.03.009

Strategic tillage in conservation agricultural systems of north-eastern Australia: why, where, when and how?

Dang, Yash Pal, Balzer, Anna, Crawford, Mark, Rincon-Florez, Vivian, Liu, Hongwei, Melland, Alice Rowena, Antille, Diogenes, Kodur, Shreevatsa, Bell, Michael John, Whish, Jeremey Patrick Milroy, Lai, Yunru, Seymour, Nikki, Carvalhais, Lilia Costa and Schenk, Peer (2017). Strategic tillage in conservation agricultural systems of north-eastern Australia: why, where, when and how?. Environmental Science and Pollution Research, 25 (2), 1-16. doi: 10.1007/s11356-017-8937-1

Effects of jasmonic acid signalling on the wheat microbiome differ between body sites

Liu, Hongwei, Carvalhais, Lilia C., Schenk, Peer M. and Dennis, Paul G. (2017). Effects of jasmonic acid signalling on the wheat microbiome differ between body sites. Scientific Reports, 7 (1) srep41766, 41766. doi: 10.1038/srep41766

Strategic tillage increased the relative abundance of Acidobacteria but did not impact on overall soil microbial properties of a 19-year no-till Solonetz

Liu, Hongwei, Carvalhais, Lilia C., Crawford, Mark, Dang, Yash P., Dennis, Paul G. and Schenk, Peer M. (2016). Strategic tillage increased the relative abundance of Acidobacteria but did not impact on overall soil microbial properties of a 19-year no-till Solonetz. Biology and Fertility of Soils, 52 (7), 1021-1035. doi: 10.1007/s00374-016-1138-0

Development of marker genes for jasmonic acid signaling in shoots and roots of wheat

Liu, Hongwei, Carvalhais, Lilia Costa, Kazan, Kemal and Schenk, Peer M. (2016). Development of marker genes for jasmonic acid signaling in shoots and roots of wheat. Plant Signaling and Behavior, 11 (5) e1176654, e1176654. doi: 10.1080/15592324.2016.1176654

One-time strategic tillage does not cause major impacts on soil microbial properties in a no-till Calcisol

Liu, Hongwei, Carvalhais, Lilia C., Rincon-Florez, Vivian, Crawford, Mark, Dang, Yash P., Dennis, Paul G. and Schenk, Peer M. (2016). One-time strategic tillage does not cause major impacts on soil microbial properties in a no-till Calcisol. Soil and Tillage Research, 158, 91-99. doi: 10.1016/j.still.2015.12.007

Short-term impact of an occasional tillage on microbial communities in a Vertosol after 43 years of no-tillage or conventional tillage

Rincon-Florez, Vivian A., Ng, Clement, Dang, Yash P., Schenk, Peer M. and Carvalhais, Lilia C. (2016). Short-term impact of an occasional tillage on microbial communities in a Vertosol after 43 years of no-tillage or conventional tillage. European Journal of Soil Biology, 74, 32-38. doi: 10.1016/j.ejsobi.2016.03.001

Strategic tillage on a Grey Vertosol after fifteen years of no-till management had no short-term impact on soil properties and agronomic productivity

Liu, Hongwei, Crawford, Mark, Carvalhais, Lilia C., Dang, Yash P., Dennis, Paul G. and Schenk, Peer M. (2016). Strategic tillage on a Grey Vertosol after fifteen years of no-till management had no short-term impact on soil properties and agronomic productivity. Geoderma, 267, 146-155. doi: 10.1016/j.geoderma.2016.01.002

Relationship between soil fungal diversity and temperature in the maritime Antarctic

Newsham, Kevin K., Hopkins, David W., Carvalhais, Lilia C., Fretwell, Peter T., Rushton, Steven P., O'Donnell, Anthony G. and Dennis, Paul G. (2016). Relationship between soil fungal diversity and temperature in the maritime Antarctic. Nature Climate Change, 6 (2), 182-186. doi: 10.1038/nclimate2806

Effect of plant species on P cycle-related microorganisms associated with litter decomposition and P soil availability: implications for agroforestry management

Correa, Eduardo, Carvalhais, Lilia, Utida, Mirian, Oliveira, Christiane Abreu and Scotti, Maria Rita (2015). Effect of plant species on P cycle-related microorganisms associated with litter decomposition and P soil availability: implications for agroforestry management. IForest, 9 (2), 294-302. doi: 10.3832/ifor1459-008

Occasional tillage has no effect on soil microbial biomass, activity and composition in Vertisols under long-term no-till

Rincon-Florez, Vivian A., Dang, Yash P., Crawford, Mark H., Schenk, Peer M. and Carvalhais, Lilia C. (2015). Occasional tillage has no effect on soil microbial biomass, activity and composition in Vertisols under long-term no-till. Biology and Fertility of Soils, 52 (2), 191-202. doi: 10.1007/s00374-015-1066-4

Linking jasmonic acid signaling, root exudates, and rhizosphere microbiomes

Carvalhais, Lilia C., Dennis, Paul G., Badri, Dayakar V., Kidd, Brendan N., Vivanco, Jorge M. and Schenk, Peer M. (2015). Linking jasmonic acid signaling, root exudates, and rhizosphere microbiomes. Molecular Plant-Microbe Interactions, 28 (9), 1049-1058. doi: 10.1094/MPMI-01-15-0016-R

Changes in the soil quality attributes of continuous no-till farming systems following a strategic tillage

Crawford, M. H., Rincon-Florez, V., Balzer, A., Dang, Y. P., Carvalhais, L. C., Liu, H. and Schenk, P. M. (2015). Changes in the soil quality attributes of continuous no-till farming systems following a strategic tillage. Soil Research, 53 (3), 263-273. doi: 10.1071/SR14216

Influence of root exudates on the extracellular proteome of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42

Kierul, Kinga, Voigt, Birgit, Albrecht, Dirk, Chen, Xiao-Hua, Carvalhais, Lilia C. and Rainer Borriss (2015). Influence of root exudates on the extracellular proteome of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42. Microbiology, 161 (1), 131-147. doi: 10.1099/mic.0.083576-0

Molecular defense responses in roots and the rhizosphere against Fusarium oxysporum

Chen, Yi Chung, Kidd, Brendan N., Carvalhais, Lilia C. and Schenk, Peer M. (2014). Molecular defense responses in roots and the rhizosphere against Fusarium oxysporum. Plant Signaling and Behavior, 9 (12) e977710, e977710-1-e977710-3. doi: 10.4161/15592324.2014.977710

Plant defence inducers rapidly influence the diversity of bacterial communities in a potting mix

Carvalhais, Lilia C., Dennis, Paul G. and Schenk, Peer M. (2014). Plant defence inducers rapidly influence the diversity of bacterial communities in a potting mix. Applied Soil Ecology, 84, 1-5. doi: 10.1016/j.apsoil.2014.06.011

Erratum to Root exudation of sugars, amino acids, and organic acids by maize as affected by nitrogen, phosphorus, potassium, and iron deficiency [J. Plant Nutr. Soil Sci 174 (2011) 311]

Carvalhais, Lilia C., Dennis, Paul G., Fedoseyenko, Dmitri, Hajirezaei, Mohammad-Reza, Borriss, Rainer and von Wirén, Nicolaus (2013). Erratum to Root exudation of sugars, amino acids, and organic acids by maize as affected by nitrogen, phosphorus, potassium, and iron deficiency [J. Plant Nutr. Soil Sci 174 (2011) 311]. Journal of Plant Nutrition and Soil Science, 176 (4), 641-641. doi: 10.1002/jpln.201390025

Linking plant nutritional status to plant-microbe interactions

Carvalhais, Lilia C., Dennis, Paul G., Fan, Ben, Fedoseyenko, Dmitri, Kierul, Kinga, Becker, Anke, von Wiren, Nicolaus and Borriss, Rainer (2013). Linking plant nutritional status to plant-microbe interactions. PLoS One, 8 (7) e68555, e68555.1-e68555.13. doi: 10.1371/journal.pone.0068555

Plant growth in Arabidopsis is assisted by compost soil-derived microbial communities

Carvalhais, Lilia C., Muzzi, Frederico, Tan, Chin-Hong, Hsien-Choo, Jin and Schenk, Peer M. (2013). Plant growth in Arabidopsis is assisted by compost soil-derived microbial communities. Frontiers in Plant Science, 4 (JUL) 235, 235.1-235.15. doi: 10.3389/fpls.2013.00235

Activation of the jasmonic acid plant defence pathway alters the composition of rhizosphere bacterial communities

Carvalhais, Lilia C., Dennis, Paul G., Badri, Dayakar V., Tyson, Gene W., Vivanco, Jorge M. and Schenk, Peer M. (2013). Activation of the jasmonic acid plant defence pathway alters the composition of rhizosphere bacterial communities. PLoS ONE, 8 (2) e56457, e56457. doi: 10.1371/journal.pone.0056457

Culture-independent molecular tools for soil and rhizosphere microbiology

Rincon-Florez, Vivian A., Carvalhais, Lilia C. and Schenk, Peer M. (2013). Culture-independent molecular tools for soil and rhizosphere microbiology. Diversity, 5 (3), 581-612. doi: 10.3390/d5030581

Sample processing and cDNA preparation for microbial metatranscriptomics in complex soil communities

Carvalhais, Lilia C. and Schenk, Peer M. (2013). Sample processing and cDNA preparation for microbial metatranscriptomics in complex soil communities. Methods in Enzymology, 531, 251-267. doi: 10.1016/B978-0-12-407863-5.00013-7

Application of metatranscriptomics to soil environments

Carvalhais, Lilia C., Dennis, Paul G., Tyson, Gene W. and Schenk, Peer M. (2012). Application of metatranscriptomics to soil environments. Journal of Microbiological Methods, 91 (2), 246-251. doi: 10.1016/j.mimet.2012.08.011

Transcriptomic profiling of Bacillus amyloliquefaciens FZB42 in response to maize root exudates

Fan, Ben, Carvalhais, Lilia C., Becker, Anke, Fedoseyenko, Dmitri, von Wiren, Nicolaus and Borriss, Rainer (2012). Transcriptomic profiling of Bacillus amyloliquefaciens FZB42 in response to maize root exudates. BMC Microbiology, 12 (1) 116, 116.1-116.13. doi: 10.1186/1471-2180-12-116

Unravelling plant-microbe interactions: Can multi-species transcriptomics help?

Schenk, Peer M., Carvalhais, Lilia C. and Kazan, Kemal (2012). Unravelling plant-microbe interactions: Can multi-species transcriptomics help?. Trends in Biotechnology, 30 (3), 177-184. doi: 10.1016/j.tibtech.2011.11.002

Root exudation of sugars, amino acids, and organic acids by maize as affected by nitrogen, phosphorus, potassium, and iron deficiency

Carvalhais, Lilia C., Dennis, Paul G., Fedoseyenko, Dmitri, Hajirezaei, Mohammad-Reza, Borriss, Rainer and von Wiren, Nicolaus (2011). Root exudation of sugars, amino acids, and organic acids by maize as affected by nitrogen, phosphorus, potassium, and iron deficiency. Journal of Plant Nutrition and Soil Science, 174 (1), 3-11. doi: 10.1002/jpln.201000085

Rhizobium strains competitiveness on bean nodulation in Cerrado soils

Raposeiras, Ruy, Marriel, Ivanildo Evodio, Muzzi, Maria Rita Scotti, Paiva, Edilson, Filho, Israel Alexandre Pereira, Carvalhais, Lilia Costa, Passos, Raul Vinicius Magalhaes, Pinto, Patricia Pereira and de Sa, Nadja Maria Horta (2006). Rhizobium strains competitiveness on bean nodulation in Cerrado soils. Pesquisa Agropecuaria Brasileira, 41 (3), 439-447. doi: 10.1590/S0100-204X2006000300010

WS1.4: Biostimulation of bacteria for streamlined identification of new antimicrobial compounds

Mirzaee, Hooman, Ariens, Emily, Booth, James, Carvalhais, Lilia C., Blaskovich, Mark A.T., Clark, Richard J. and Schenk, Peer M. (2022). WS1.4: Biostimulation of bacteria for streamlined identification of new antimicrobial compounds. 32nd International Congress of Antimicrobial Chemotherapy (ICC), Perth, WA Australia, 27 – 30 November 2022. Amsterdam, Netherlands: Elsevier BV. doi: 10.1016/s2213-7165(22)00272-7

Strategic tillage did not affect soil microbial bioindicators in long-term no-till farming systems in vertosols from Queensland, Australia

Rincon-Florez, Vivian A., Carvalhais, Lilia C., Liu, Hongwei, Dang, Yash, Crawford, Mark, Balzer, Anna, Bell, Mike, Ram, Dalal and Schenk, Peer (2014). Strategic tillage did not affect soil microbial bioindicators in long-term no-till farming systems in vertosols from Queensland, Australia. Soil Science 2014: National Soil Science Conference, Melbourne, VIC, Australia, 23-27 November 2014. Warragul, VIC, Australia: Australian Society of Soil Science.

Strategic tillage impacts on biological attributes of long term no-till soils in northern grain region of Australia

Liu, Hongwei, Rincon-Florez, Vivian, Dang, Yash, Crawford, Mark, Balzer, Anna, Bell, Mike, Ram, Dalal, Costa Carvalhais, Lilia and Schenk, Peer (2014). Strategic tillage impacts on biological attributes of long term no-till soils in northern grain region of Australia. Soil Science 2014: National Soil Science Conference, Melbourne, VIC, Australia, 23-27 November, 2014. Warragul, VIC, Australia: Australian Society of Soil Science.