The University of Queensland

Journal Article

• In-silico functional annotation of Plasmodium falciparum hypothetical proteins to identify novel drug targets

  Singh, Gagandeep and Gupta, Dinesh (2022). In-silico functional annotation of Plasmodium falciparum hypothetical proteins to identify novel drug targets. Frontiers in Genetics, 13 821516. doi: 10.3389/fgene.2022.821516

• Machine learning assisted analysis of breast cancer gene expression profiles reveals novel potential prognostic biomarkers for triple-negative breast cancer

  Thalor, Anamika, Joon, Hemant Kumar, Singh, Gagandeep, Roy, Shikha and Gupta, Dinesh (2022). Machine learning assisted analysis of breast cancer gene expression profiles reveals novel potential prognostic biomarkers for triple-negative breast cancer. Computational and Structural Biotechnology Journal, 20, 1618-1631. doi: 10.1016/j.csbj.2022.03.019

• Genome-wide interologous interactome map (TeaGPIN) of Camellia sinensis

  Singh, Gagandeep, Singh, Vikram and Singh, Vikram (2021). Genome-wide interologous interactome map (TeaGPIN) of Camellia sinensis. Genomics, 113 (1), 553-564. doi: 10.1016/j.ygeno.2020.09.048

• TulsiPIN: an interologous protein Interactome of Ocimum tenuiflorum

  Singh, Vikram, Singh, Gagandeep and Singh, Vikram (2020). TulsiPIN: an interologous protein Interactome of Ocimum tenuiflorum. Journal of Proteome Research, 19 (2), 884-899. doi: 10.1021/acs.jproteome.9b00683

• Construction and analysis of an interologous protein-protein interaction network of Camellia sinensis leaf (TeaLIPIN) from RNA-Seq data sets

  Singh, Gagandeep and Singh, Vikram (2019). Construction and analysis of an interologous protein-protein interaction network of Camellia sinensis leaf (TeaLIPIN) from RNA-Seq data sets. Plant Cell Reports, 38, 1249-1262. doi: 10.1007/s00299-019-02440-y

• Functional annotation and characterization of hypothetical protein involved in blister blight tolerance in tea (Camellia sinensis (L) O. Kuntze)

  Singh, Gagandeep, Singh, Gopal, Seth, Romit, Parmar, Rajni, Singh, Pradeep, Singh, Vikram, Kumar, Sanjay and Sharma, Ram Kumar (2019). Functional annotation and characterization of hypothetical protein involved in blister blight tolerance in tea (Camellia sinensis (L) O. Kuntze). Journal of Plant Biochemistry and Biotechnology, 28 (4), 447-459. doi: 10.1007/s13562-019-00492-5

• Functional elucidation of hypothetical proteins for their indispensable roles toward drug designing targets from Helicobacter pylori strain HPAG1

  Singh, Gagandeep and Singh, Vikram (2018). Functional elucidation of hypothetical proteins for their indispensable roles toward drug designing targets from Helicobacter pylori strain HPAG1. Journal of Biomolecular Structure & Dynamics, 36 (4), 906-918. doi: 10.1080/07391102.2017.1302361

• Molecular dissection of transcriptional reprogramming of steviol glycosides synthesis in leaf tissue during developmental phase transitions in Stevia rebaudiana Bert

  Singh, Gopal, Singh, Gagandeep, Singh, Pradeep, Parmar, Rajni, Paul, Navgeet, Vashist, Radhika, Swarnkar, Mohit Kumar, Kumar, Ashok, Singh, Sanatsujat, Singh, Anil Kumar, Kumar, Sanjay and Sharma, Ram Kumar (2017). Molecular dissection of transcriptional reprogramming of steviol glycosides synthesis in leaf tissue during developmental phase transitions in Stevia rebaudiana Bert. Scientific Reports, 7 (1) 11835. doi: 10.1038/s41598-017-12025-y

• Development of genome-wide SSR markers in horsegram and their use for genetic diversity and cross-transferability analysis

  Kaldate, Rahul, Rana, Maneet, Sharma, Vikas, Hirakawa, Hideki, Kumar, Rahul, Singh, Gagandeep, Chahota, Rakesh Kumar, Isobe, Sachiko N. and Sharma, Tilak Raj (2017). Development of genome-wide SSR markers in horsegram and their use for genetic diversity and cross-transferability analysis. Molecular Breeding, 37 (8) 103. doi: 10.1007/s11032-017-0701-1

• Spatial transcriptome analysis provides insights of key gene(s) involved in steroidal saponin biosynthesis in medicinally important herb Trillium govanianum

  Singh, Pradeep, Singh, Gagandeep, Bhandawat, Abhishek, Singh, Gopal, Parmar, Rajni, Seth, Romit and Sharma, Ram Kumar (2017). Spatial transcriptome analysis provides insights of key gene(s) involved in steroidal saponin biosynthesis in medicinally important herb Trillium govanianum. Scientific Reports, 7 (1) 45295. doi: 10.1038/srep45295

• In silico functional elucidation of uncharacterized proteins of Chlamydia abortus strain LLG

  Singh, Gagandeep, Sharma, Dixit, Singh, Vikram, Rani, Jyoti, Marotta, Francessco, Kumar, Manoj, Mal, Gorakh and Singh, Birbal (2017). In silico functional elucidation of uncharacterized proteins of Chlamydia abortus strain LLG. Future Science OA, 3 (1). doi: 10.4155/fsoa-2016-0066

• Chilling affects phytohormone and post-embryonic development pathways during bud break and fruit set in apple (Malus domestica Borkh.)

  Kumar, Gulshan, Gupta, Khushboo, Pathania, Shivalika, Swarnkar, Mohit Kumar, Rattan, Usha Kumari, Singh, Gagandeep, Sharma, Ram Kumar and Singh, Anil Kumar (2017). Chilling affects phytohormone and post-embryonic development pathways during bud break and fruit set in apple (Malus domestica Borkh.). Scientific Reports, 7 (1) 42593. doi: 10.1038/srep42593

• Genome-wide transcriptional profiling to elucidate key candidates involved in bud burst and rattling growth in a subtropical bamboo (Dendrocalamus hamiltonii)

  Bhandawat, Abhishek, Singh, Gagandeep, Seth, Romit, Singh, Pradeep and Sharma, Ram K. (2017). Genome-wide transcriptional profiling to elucidate key candidates involved in bud burst and rattling growth in a subtropical bamboo (Dendrocalamus hamiltonii). Frontiers in Plant Science, 7 2038. doi: 10.3389/fpls.2016.02038

• Transcriptome analysis reveals candidate genes involved in blister blight defense in tea (Camellia sinensis (L) Kuntze)

  Jayaswall, Kuldip, Mahajan, Pallavi, Singh, Gagandeep, Parmar, Rajni, Seth, Romit, Raina, Aparnashree, Swarnkar, Mohit Kumar, Singh, Anil Kumar, Shankar, Ravi and Sharma, Ram Kumar (2016). Transcriptome analysis reveals candidate genes involved in blister blight defense in tea (Camellia sinensis (L) Kuntze). Scientific Reports, 6 (1) 30412. doi: 10.1038/srep30412

• Development of genic SSR marker resource from RNA-Seq data in Dendrocalamus latiflorus

  Bhandawat, Abhishek, Singh, Gagandeep, Raina, Aparna Shree, Kaur, Jagdeep and Sharma, Ram Kumar (2016). Development of genic SSR marker resource from RNA-Seq data in Dendrocalamus latiflorus. Journal of Plant Biochemistry and Biotechnology, 25 (2), 179-190. doi: 10.1007/s13562-015-0323-9