The University of Queensland

On the analysis of rapidly sampled fMRI data

Chen, Jingyuan E., Polimeni, Jonathan R., Bollmann, Saskia and Glover, Gary H. (2019). On the analysis of rapidly sampled fMRI data. NeuroImage, 188, 807-820. doi: 10.1016/j.neuroimage.2019.02.008

Serial correlations in single-subject fMRI with sub-second TR

Bollmann, Saskia, Puckett, Alexander M., Cunnington, Ross and Barth, Markus (2017). Serial correlations in single-subject fMRI with sub-second TR. NeuroImage, 166, 152-166. doi: 10.1016/j.neuroimage.2017.10.043

Analysis and correction of field fluctuations in fMRI data using field monitoring

Bollmann, Saskia, Kasper, Lars, Vannesjo, S. Johanna, Diaconescu, Andreea O., Dietrich, Benjamin E., Gross, Simon, Stephan, Klaas E. and Pruessmann, Klaas P. (2017). Analysis and correction of field fluctuations in fMRI data using field monitoring. Neuroimage, 154, 92-105. doi: 10.1016/j.neuroimage.2017.01.014

Brain segmentation at ultra-high field: Challenges, opportunities, and unmet needs

Polimeni, Jonathan R., Bollmann, Saskia and Reuter, Martin (2023). Brain segmentation at ultra-high field: Challenges, opportunities, and unmet needs. Advances in Magnetic Resonance Technology and Applications. (pp. 193-209) Elsevier. doi: 10.1016/b978-0-323-99898-7.00002-x

Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging

Renton, Angela I., Dao, Thuy T., Johnstone, Tom, Civier, Oren, Sullivan, Ryan P., White, David J., Lyons, Paris, Slade, Benjamin M., Abbott, David F., Amos, Toluwani J., Bollmann, Saskia, Botting, Andy, Campbell, Megan E. J., Chang, Jeryn, Close, Thomas G., Dörig, Monika, Eckstein, Korbinian, Egan, Gary F., Evas, Stefanie, Flandin, Guillaume, Garner, Kelly G., Garrido, Marta I., Ghosh, Satrajit S., Grignard, Martin, Halchenko, Yaroslav O., Hannan, Anthony J., Heinsfeld, Anibal S., Huber, Laurentius, Hughes, Matthew E. ... Bollmann, Steffen (2024). Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging. Nature Methods. doi: 10.1038/s41592-023-02145-x

Improved dynamic distortion correction for fMRI using single‐echo EPI and a readout‐reversed first image (REFILL)

Robinson, Simon Daniel, Bachrata, Beata, Eckstein, Korbinian, Bollmann, Saskia, Bollmann, Steffen, Dymerska, Barbara, Hodono, Shota, Cloos, Martijn, Tourell, Monique, Jin, Jin, O'Brien, Kieran, Reutens, David C., Trattnig, Siegfried, Enzinger, Christian and Barth, Markus (2023). Improved dynamic distortion correction for fMRI using single‐echo EPI and a readout‐reversed first image (REFILL). Human Brain Mapping, 44 (15), 5095-5112. doi: 10.1002/hbm.26440

Scaling the mountains: what lies above 7 Tesla magnetic resonance?

Schmidt, Rita, Keban, Elena, Bollmann, Saskia, Wiggins, Christopher J. and Niendorf, Thoralf (2023). Scaling the mountains: what lies above 7 Tesla magnetic resonance?. Magnetic Resonance Materials in Physics, Biology and Medicine, 36 (2), 151-157. doi: 10.1007/s10334-023-01087-x

Correction to: Scaling the mountains: what lies above 7 Tesla magnetic resonance? (Magnetic Resonance Materials in Physics, Biology and Medicine, (2023), 36, 2, (151-157), 10.1007/s10334-023-01087-x)

Schmidt, Rita, Kleban, Elena, Bollmann, Saskia, Wiggins, Christopher J. and Niendorf, Thoralf (2023). Correction to: Scaling the mountains: what lies above 7 Tesla magnetic resonance? (Magnetic Resonance Materials in Physics, Biology and Medicine, (2023), 36, 2, (151-157), 10.1007/s10334-023-01087-x). Magnetic Resonance Materials in Physics, Biology and Medicine, 36 (5), 849-849. doi: 10.1007/s10334-023-01097-9

Mesoscopic in vivo human T2* dataset acquired using quantitative MRI at 7 Tesla

Gulban, Omer Faruk, Bollmann, Saskia, Huber, Laurentius (Renzo), Wagstyl, Konrad, Goebel, Rainer, Poser, Benedikt A., Kay, Kendrick and Ivanov, Dimo (2022). Mesoscopic in vivo human T2* dataset acquired using quantitative MRI at 7 Tesla. NeuroImage, 264 119733, 1-15. doi: 10.1016/j.neuroimage.2022.119733

Modelling the depth‐dependent VASO and BOLD responses in human primary visual cortex

Akbari, Atena, Bollmann, Saskia, Ali, Tonima S. and Barth, Markus (2022). Modelling the depth‐dependent VASO and BOLD responses in human primary visual cortex. Human Brain Mapping, 44 (2), 710-726. doi: 10.1002/hbm.26094

Imaging of the pial arterial vasculature of the human brain in vivo using high-resolution 7T time-of-flight angiography

Bollmann, Saskia, Mattern, Hendrik, Bernier, Michaël, Robinson, Simon D., Park, Daniel J., Speck, Oliver and Polimeni, Jonathan R. (2022). Imaging of the pial arterial vasculature of the human brain in vivo using high-resolution 7T time-of-flight angiography. eLife, 11 e71186, 1-35. doi: 10.7554/elife.71186

Unsupervised physiological noise correction of functional magnetic resonance imaging data using phase and magnitude information (PREPAIR)

Bancelin, David, Bachrata, Beata, Bollmann, Saskia, de Lima Cardoso, Pedro, Szomolanyi, Pavol, Trattnig, Siegfried and Robinson, Simon Daniel (2022). Unsupervised physiological noise correction of functional magnetic resonance imaging data using phase and magnitude information (PREPAIR). Human Brain Mapping, 44 (3), 1209-1226. doi: 10.1002/hbm.26152

New acquisition techniques and their prospects for the achievable resolution of fMRI

Bollmann, Saskia and Barth, Markus (2021). New acquisition techniques and their prospects for the achievable resolution of fMRI. Progress in Neurobiology, 207 101936, 1-15. doi: 10.1016/j.pneurobio.2020.101936

Centering inclusivity in the design of online conferences—An OHBM–Open Science perspective

Levitis, Elizabeth, van Praag, Cassandra D Gould, Gau, Rémi, Heunis, Stephan, DuPre, Elizabeth, Kiar, Gregory, Bottenhorn, Katherine L, Glatard, Tristan, Nikolaidis, Aki, Whitaker, Kirstie Jane, Mancini, Matteo, Niso, Guiomar, Afyouni, Soroosh, Alonso-Ortiz, Eva, Appelhoff, Stefan, Arnatkeviciute, Aurina, Atay, Selim Melvin, Auer, Tibor, Baracchini, Giulia, Bayer, Johanna M M, Beauvais, Michael J S, Bijsterbosch, Janine D, Bilgin, Isil P, Bollmann, Saskia, Bollmann, Steffen, Botvinik-Nezer, Rotem, Bright, Molly G, Calhoun, Vince D, Chen, Xiao ... Maumet, Camille (2021). Centering inclusivity in the design of online conferences—An OHBM–Open Science perspective. GigaScience, 10 (8) giab051. doi: 10.1093/gigascience/giab051

Brainhack: Developing a culture of open, inclusive, community-driven neuroscience

Gau, Rémi, Noble, Stephanie, Heuer, Katja, Bottenhorn, Katherine L., Bilgin, Isil P., Yang, Yu-Fang, Huntenburg, Julia M., Bayer, Johanna M.M., Bethlehem, Richard A.I., Rhoads, Shawn A., Vogelbacher, Christoph, Borghesani, Valentina, Levitis, Elizabeth, Wang, Hao-Ting, Van Den Bossche, Sofie, Kobeleva, Xenia, Legarreta, Jon Haitz, Guay, Samuel, Atay, Selim Melvin, Varoquaux, Gael P., Huijser, Dorien C., Sandström, Malin S., Herholz, Peer, Nastase, Samuel A., Badhwar, AmanPreet, Dumas, Guillaume, Schwab, Simon, Moia, Stefano, Dayan, Michael ... Zuo, Xi-Nian (2021). Brainhack: Developing a culture of open, inclusive, community-driven neuroscience. Neuron, 109 (11), 1769-1775. doi: 10.1016/j.neuron.2021.04.001

TAPAS: An Open-Source Software Package for Translational Neuromodeling and Computational Psychiatry

Frässle, Stefan, Aponte, Eduardo A., Bollmann, Saskia, Brodersen, Kay H., Do, Cao T., Harrison, Olivia K., Harrison, Samuel J., Heinzle, Jakob, Iglesias, Sandra, Kasper, Lars, Lomakina, Ekaterina I., Mathys, Christoph, Müller-Schrader, Matthias, Pereira, Inês, Petzschner, Frederike H., Raman, Sudhir, Schöbi, Dario, Toussaint, Birte, Weber, Lilian A., Yao, Yu and Stephan, Klaas E. (2021). TAPAS: An Open-Source Software Package for Translational Neuromodeling and Computational Psychiatry. Frontiers in Psychiatry, 12 680811, 680811. doi: 10.3389/fpsyt.2021.680811

Dissociable effects of tDCS polarity on latent decision processes are associated with individual differences in neurochemical concentrations and cortical morphology

Filmer, Hannah L., Ballard, Timothy, Ehrhardt, Shane E., Bollmann, Saskia, Shaw, Thomas B., Mattingley, Jason B. and Dux, Paul E. (2020). Dissociable effects of tDCS polarity on latent decision processes are associated with individual differences in neurochemical concentrations and cortical morphology. Neuropsychologia, 141 107433, 1-9. doi: 10.1016/j.neuropsychologia.2020.107433

Bayesian population receptive field modeling in human somatosensory cortex

Puckett, Alexander M., Bollmann, Saskia, Junday, Keerat, Barth, Markus and Cunnington, Ross (2020). Bayesian population receptive field modeling in human somatosensory cortex. NeuroImage, 208 116465, 116465. doi: 10.1016/j.neuroimage.2019.116465

Accounting for individual differences in the response to tDCS with baseline levels of neurochemical excitability

Filmer, Hannah L., Ehrhardt, Shane E., Bollmann, Saskia, Mattingley, Jason B. and Dux, Paul E. (2019). Accounting for individual differences in the response to tDCS with baseline levels of neurochemical excitability. Cortex, 115, 324-334. doi: 10.1016/j.cortex.2019.02.012

On the analysis of rapidly sampled fMRI data

Chen, Jingyuan E., Polimeni, Jonathan R., Bollmann, Saskia and Glover, Gary H. (2019). On the analysis of rapidly sampled fMRI data. NeuroImage, 188, 807-820. doi: 10.1016/j.neuroimage.2019.02.008

Patient with ALS with a novel TBK1 mutation, widespread brain involvement, behaviour changes and metabolic dysfunction

McCombe, Pamela A., Ngo, Shyuan T., Guo, Christine Cong, Fazlollahi, Amir, Bollmann, Saskia, Wang, Liting, Hu, Xintao, Barth, Markus, Salvado, Olivier, Davis, Mark, Ceslis, Amelia, Robinson, Gail, Henderson, Robert D. and Steyn, Frederik J. (2018). Patient with ALS with a novel TBK1 mutation, widespread brain involvement, behaviour changes and metabolic dysfunction. Journal of Neurology, Neurosurgery and Psychiatry, 90 (8), 952-954. doi: 10.1136/jnnp-2018-318823

Using multi-echo simultaneous multi-slice (SMS) EPI to improve functional MRI of the subcortical nuclei of the basal ganglia at ultra-high field (7T)

Puckett, Alexander M., Bollmann, Saskia, Poser, Benedikt A., Palmer, Jake, Barth, Markus and Cunnington, Ross (2017). Using multi-echo simultaneous multi-slice (SMS) EPI to improve functional MRI of the subcortical nuclei of the basal ganglia at ultra-high field (7T). NeuroImage, 172, 886-895. doi: 10.1016/j.neuroimage.2017.12.005

Measuring the effects of attention to individual fingertips in somatosensory cortex using ultra-high field (7T) fMRI

Puckett, Alex, Bollmann, Saskia, Barth, Markus and Cunnington, Ross (2017). Measuring the effects of attention to individual fingertips in somatosensory cortex using ultra-high field (7T) fMRI. NeuroImage, 161, 179-187. doi: 10.1016/j.neuroimage.2017.08.014

Serial correlations in single-subject fMRI with sub-second TR

Bollmann, Saskia, Puckett, Alexander M., Cunnington, Ross and Barth, Markus (2017). Serial correlations in single-subject fMRI with sub-second TR. NeuroImage, 166, 152-166. doi: 10.1016/j.neuroimage.2017.10.043

Analysis and correction of field fluctuations in fMRI data using field monitoring

Bollmann, Saskia, Kasper, Lars, Vannesjo, S. Johanna, Diaconescu, Andreea O., Dietrich, Benjamin E., Gross, Simon, Stephan, Klaas E. and Pruessmann, Klaas P. (2017). Analysis and correction of field fluctuations in fMRI data using field monitoring. Neuroimage, 154, 92-105. doi: 10.1016/j.neuroimage.2017.01.014

Monitoring, analysis, and correction of magnetic field fluctuations in echo planar imaging time series

Kasper, Lars, Bollmann, Saskia, Vannesjo, S. Johanna, Gross, Simon, Haeberlin, Maximilian, Dietrich, Benjamin E. and Pruessmann, Klaas P. (2015). Monitoring, analysis, and correction of magnetic field fluctuations in echo planar imaging time series. Magnetic Resonance in Medicine, 74 (2), 396-409. doi: 10.1002/mrm.25407

Evaluating ultra-short echo time (UTE) cerebral blood volume (CBV)-based fMRI using an iron-oxide contrast agent in mouse visual cortex at 9.4T

Jain, Naman, Bollmann, Saskia, Polimeni, Jonathan, Chuang, Kai-Hsiang and Barth, Markus (2023). Evaluating ultra-short echo time (UTE) cerebral blood volume (CBV)-based fMRI using an iron-oxide contrast agent in mouse visual cortex at 9.4T. ISMRT 31st Annual Meeting, London, United Kingdom, 7-12 May 2022. Concord, CA USA: ISMRM. doi: 10.58530/2022/2336

Evaluation of the REFILL dynamic distortion correction method for fMRI

Robinson, Simon, Bachrata, Beata, Eckstein, Korbinian, Dymerska, Barbara, Bollmann, Saskia, Bollmann, Steffen, Hodono, Shota, Cloos, Martijn, Tourell, Monique, Jin, Jin, O'Brien, Kieran, Reutens, David, Trattnig, Siegfried, Enzinger, Christian and Barth, Markus (2023). Evaluation of the REFILL dynamic distortion correction method for fMRI. Joint Annual Meeting ISMRM-ESMRMB ISMRT 31st Annual Meeting, London, United Kingdom, 7 - 12 May 2022. Berkeley, CA, United States: International Society for Magnetic Resonance in Medicine. doi: 10.58530/2022/2807

Non-Linear Realignment Using Minimum Deformation Averaging for Single-Subject FMRI at Ultra-High Field

Saskia Bollmann, Steffen Bollmann, Alex Puckett, Andrew Janke and Markus Barth (2017). Non-Linear Realignment Using Minimum Deformation Averaging for Single-Subject FMRI at Ultra-High Field. ISMRM, Honolulu, 22-27 April 2017.

Submillimeter, aub-minute quantitative susceptibility mapping using a multi-shot 3D-EPI with 2D CAIPIRINHA acceleration

Tourell, Monique, Jin, Jin, Stewart, Ashley, Bollmann, Saskia, Bollmann, Steffen, Robinson, Simon, O'Brien, Kieran and Barth, Markus eds. (2021). Submillimeter, aub-minute quantitative susceptibility mapping using a multi-shot 3D-EPI with 2D CAIPIRINHA acceleration. ISMRM 2021, Online, 15-20 May 2021. Concord, CA USA: International Society for Magnetic Resonance in Medicine.

Accounting for variability in the efficacy of tDCS with cortical structure and neurochemicals

Filmer, Hannah L, Ehrhardt, Shane E, Bollmann, Saskia, Shaw, Thomas B, Mattingley, Jason B and Dux, Paul E (2019). Accounting for variability in the efficacy of tDCS with cortical structure and neurochemicals. The University of Queensland. (Dataset) doi: 10.14264/uql.2019.12

Evaluating Acquisition Techniques for Functional Magnetic Resonance Imaging at Ultra-High Field

Bollmann, Saskia (2018). Evaluating Acquisition Techniques for Functional Magnetic Resonance Imaging at Ultra-High Field. PhD Thesis, Queensland Brain Institute, The University of Queensland. doi: 10.14264/uql.2018.635