The University of Queensland

Models of long-distance transport: How is carrier-dependent auxin transport regulated in the stem?

Renton, Michael, Hanan, Jim, Ferguson, Brett J. and Beveridge, Christine A. (2012). Models of long-distance transport: How is carrier-dependent auxin transport regulated in the stem?. New Phytologist, 194 (3), 704-715. doi: 10.1111/j.1469-8137.2012.04093.x

Towards aspect-oriented functional-structural plant modelling

Cieslak, Mikolaj, Seleznyova, Alla N., Prusinkiewicz, Przemyslaw and Hanan, Jim (2011). Towards aspect-oriented functional-structural plant modelling. Annals of Botany, 108 (6), 1025-1041. doi: 10.1093/aob/mcr121

Functional-structural plant modelling using a combination of architectural analysis, L-systems and a canonical model of function

Renton, M, Kaitaniemi, P and Hanan, J (2005). Functional-structural plant modelling using a combination of architectural analysis, L-systems and a canonical model of function. Ecological Modelling, 184 (2-4), 277-298. doi: 10.1016/j.ecolmodel.2004.10.008

Virtual plants: New perspectives for ecologists, pathologists and agricultural scientists

Room, PM, Hanan, JS and Prusinkiewicz, P (1996). Virtual plants: New perspectives for ecologists, pathologists and agricultural scientists. Trends in Plant Science, 1 (1), 33-38. doi: 10.1016/S1360-1385(96)80021-5

Modeling plant development with L-systems

Prusinkiewicz, Przemyslaw, Cieslak, Mikolaj, Ferraro, Pascal and Hanan, Jim (2018). Modeling plant development with L-systems. Mathematical modelling in plant biology. (pp. 139-169) edited by Richard J. Morris. Switzerland: Springer International Publishing. doi: 10.1007/978-3-319-99070-5_8

Canonical modelling: An approach for intermediate level simulation of carbon allocation in functional structural models

Renton, M., Thornby, D. and Hanan, J. (2007). Canonical modelling: An approach for intermediate level simulation of carbon allocation in functional structural models. Functional-Structural Plant Modelling in Crop Production. (pp. 151-164) edited by Vos, J., Marcelis, L. F. M., de Visser, P. H. B., Struik, P. C. and Evers, J. B.. The Netherlands: Springer.

Towards a network pattern language for complex systems

Watson, J., Hawkins, J., Bradley, D., Dassanayake, D., Wiles, J. and Hanan, J. (2005). Towards a network pattern language for complex systems. Recent Advances In Artificial Life. (pp. 309-317) Shatin, Hong Kong: World Scientific Publishing. doi: 10.1142/9789812701497_0023

Studying spatial variability of fruit size within the tree canopy with a functional-structural plant model

Auzmendi, I. and Hanan, J.S. (2023). Studying spatial variability of fruit size within the tree canopy with a functional-structural plant model. Acta Horticulturae, 1366 (1366), 203-210. doi: 10.17660/actahortic.2023.1366.23

Virtual plants for interpreting the effects of planting density on yield in young macadamia orchards

Auzmendi, I., Wilkie, J.D. and Hanan, J. (2022). Virtual plants for interpreting the effects of planting density on yield in young macadamia orchards. Acta Horticulturae (1346), 547-556. doi: 10.17660/actahortic.2022.1346.69

An aboveground biomass partitioning coefficient model for rapeseed (Brassica napus L.)

Zhang, Wenyu, Cao, Hongxin, Zhang, Weixin, Hanan, Jim Scott, Ge, Daokuo, Cao, Jing, Xia, Ji'an, Xuan, Shouli, Liang, Wanjie, Zhang, Lingling, Wu, Qian, Sun, Chuanliang, Shi, Chunlin, Liu, Yan, Chen, Yuli, Han, Xujie, Pan, Yue, Tang, Puchuan and Wu, Fei (2020). An aboveground biomass partitioning coefficient model for rapeseed (Brassica napus L.). Field Crops Research, 259 107966, 107966. doi: 10.1016/j.fcr.2020.107966

Investigating tree and fruit growth through functional-structural modelling: implications of carbon autonomy at different scales

Auzmendi, Inigo and Hanan, Jim S. (2020). Investigating tree and fruit growth through functional-structural modelling: implications of carbon autonomy at different scales. Annals of Botany, 126 (4), 775-788. doi: 10.1093/aob/mcaa098

Parameter estimation for functional-structural plant models when data are scarce: using multiple patterns for rejecting unsuitable parameter sets

Wang, Ming, White, Neil, Hanan, Jim, He, DI, Wang, Enli, Cribb, Bronwen, Kriticos, Darren J., Paini, Dean and Grimm, Volker (2020). Parameter estimation for functional-structural plant models when data are scarce: using multiple patterns for rejecting unsuitable parameter sets. Annals of Botany, 126 (4), 559-570. doi: 10.1093/aob/mcaa016

A hyperspectral GA-PLSR model for prediction of pine wilt disease

Zhang, Sulan, Huang, Jinlong, Hanan, Jim and Qin, Lin (2020). A hyperspectral GA-PLSR model for prediction of pine wilt disease. Multimedia Tools and Applications, 79 (23-24), 16645-16661. doi: 10.1007/s11042-019-07976-5

Averting robo-bees: why free-flying robotic bees are a bad idea

Gleadow, Roslyn, Hanan, Jim and Dorin, Alan (2019). Averting robo-bees: why free-flying robotic bees are a bad idea. Emerging Topics in Life Sciences, 3 (6), 723-729. doi: 10.1042/ETLS20190063

Pattern-oriented modelling as a novel way to verify and validate functional-structural plant models: a demonstration with the annual growth module of avocado

Wang, Ming, White, Neil, Grimm, Volker, Hofman, Helen, Doley, David, Thorp, Grant, Cribb, Bronwen, Wherritt, Ella, Han, Liqi, Wilkie, John and Hanan, Jim (2018). Pattern-oriented modelling as a novel way to verify and validate functional-structural plant models: a demonstration with the annual growth module of avocado. Annals of Botany, 121 (5), 941-959. doi: 10.1093/aob/mcx187

Mechanistic modelling of coupled phloem/xylem transport for L-systems: combining analytical and computational methods

Seleznyova, Alla N. and Hanan, Jim (2018). Mechanistic modelling of coupled phloem/xylem transport for L-systems: combining analytical and computational methods. Annals of Botany, 121 (5), 991-1003. doi: 10.1093/aob/mcx204

Using functional-structural modeling of carbon acquisition and utilization to understand fruit size distribution in tree canopies

Auzmendi, I. and Hanan, J. S. (2018). Using functional-structural modeling of carbon acquisition and utilization to understand fruit size distribution in tree canopies. Acta Horticulturae, 1228 (1228), 59-65. doi: 10.17660/ActaHortic.2018.1228.8

Allometric relationships for vegetative growth flush in pruned stems of macadamia (Macadamia integrifolia): effects of carbohydrate source and season

Karimaei, S., Doley, D. and Hanan, J. (2017). Allometric relationships for vegetative growth flush in pruned stems of macadamia (Macadamia integrifolia): effects of carbohydrate source and season. Crop and Pasture Science, 68 (8), 760-772. doi: 10.1071/CP17089

Spray retention on whole plants: modelling, simulations and experiments

Dorr, Gary J., Forster, W. Alison, Mayo, Lisa C., McCue, Scott W., Kempthorne, Daryl M., Hanan, Jim, Turner, Ian W., Belward, John A., Young, Joseph and Zabkiewicz, Jerzy A. (2016). Spray retention on whole plants: modelling, simulations and experiments. Crop Protection, 88, 118-130. doi: 10.1016/j.cropro.2016.06.003

A Generic Individual-Based Spatially Explicit Model as a Novel Tool for Investigating Insect-Plant Interactions: A Case Study of the Behavioural Ecology of Frugivorous Tephritidae

Wang, Ming, Cribb, Bronwen, Clarke, Anthony R. and Hanan, Jim (2016). A Generic Individual-Based Spatially Explicit Model as a Novel Tool for Investigating Insect-Plant Interactions: A Case Study of the Behavioural Ecology of Frugivorous Tephritidae. PLOS ONE, 11 (3) e0151777, e0151777. doi: 10.1371/journal.pone.0151777

Impaction of spray droplets on leaves: influence of formulation and leaf character on shatter, bounce and adhesion

Dorr, Gary J, Wang, Shuangshuang, Mayo, Lisa C, McCue, Scott W, Forster, W. Alison, Hanan, Jim and He, Xiongkui (2015). Impaction of spray droplets on leaves: influence of formulation and leaf character on shatter, bounce and adhesion. Experiments in Fluids, 56 (143) 143. doi: 10.1007/s00348-015-2012-9

Allometric relationships of maize organ development under different water regimes and plant densities

Song, Youhong, Birch, Colin, Rui, Yukui and Hanan, Jim (2015). Allometric relationships of maize organ development under different water regimes and plant densities. Plant Production Science, 18 (1), 1-10. doi: 10.1626/pps.18.1

Surface reconstruction of wheat leaf morphology from three-dimensional scanned data

Kempthorne, Daryl M., Turner, Ian W., Belward, John A., McCue, Scott W., Barry, Mark, Young, Joseph, Dorr, Gary J., Hanan, Jim and Zabkiewicz, Jerzy A. (2015). Surface reconstruction of wheat leaf morphology from three-dimensional scanned data. Functional Plant Biology, 42 (5), 444-451. doi: 10.1071/FP14058

Corrigendum: Models of long-distance transport: how is carrier-dependent auxin transport regulated in the stem?

Renton, Michael, Hanan, Jim, Ferguson, Brett J. and Beveridge, Christine A. (2014). Corrigendum: Models of long-distance transport: how is carrier-dependent auxin transport regulated in the stem?. New Phytologist, 203 (2), 705-705. doi: 10.1111/nph.12855

Towards a model of spray–canopy interactions: interception, shatter, bounce and retention of droplets on horizontal leaves

Dorr, Gary J., Kempthorne, Daryl M., Mayo, Lisa C., Forster, W. Alison, Zabkiewicz, Jerzy A., McCue, Scott W., Belward, John A., Turner, Ian W. and Hanan, Jim (2013). Towards a model of spray–canopy interactions: interception, shatter, bounce and retention of droplets on horizontal leaves. Ecological Modelling, 290 (C), 94-101. doi: 10.1016/j.ecolmodel.2013.11.002

A comparison of initial spray characteristics produced by agricultural nozzles

Dorr, Gary J., Hewitt, Andrew J., Adkins, Steve W., Hanan, Jim, Zhang, Huichun and Noller, Barry (2013). A comparison of initial spray characteristics produced by agricultural nozzles. Crop Protection, 53, 109-117. doi: 10.1016/j.cropro.2013.06.017

Plants as populations of release sites for seed dispersal: a structural-statistical analysis of the effects of competition on Raphanus raphanistrum

Kelly, Natalie, Cousens, Roger D., Taghizadeh, Mohammad S., Hanan, Jim S. and Mouillot, David (2013). Plants as populations of release sites for seed dispersal: a structural-statistical analysis of the effects of competition on Raphanus raphanistrum. Journal of Ecology, 101 (4), 878-888. doi: 10.1111/1365-2745.12097

Translating between representations in a social context: a study of undergraduate science students' representational fluency

Nichols, Kim, Ranasinghe, Muditha and Hanan, Jim (2013). Translating between representations in a social context: a study of undergraduate science students' representational fluency. Instructional Science, 41 (4), 699-728. doi: 10.1007/s11251-012-9253-2

Generalist insects behave in a jasmonate-dependent manner on their host plants, leaving induced areas quickly and staying longer on distant parts

Perkins, Lynda E., Cribb, Bronwen W., Brewer, Philip B., Hanan, Jim, Grant, Murray, de Torres, Marta and Zalucki, Myron P. (2013). Generalist insects behave in a jasmonate-dependent manner on their host plants, leaving induced areas quickly and staying longer on distant parts. Proceedings of the Royal Society B-Biological Sciences, 280 (1756) 20123017, 20122646. doi: 10.1098/rspb.2012.2646

Climate change impacts on plant canopy architecture: implications for pest and pathogen management

Pangga, Ireneo B., Hanan, Jim and Chakraborty, Sukumar (2013). Climate change impacts on plant canopy architecture: implications for pest and pathogen management. European Journal of Plant Pathology, 135 (3), 595-610. doi: 10.1007/s10658-012-0118-y

Transforming the social practices of learning with representations: a study of disciplinary discourse

Nichols, Kim, Hanan, Jim and Ranasinghe, Muditha (2013). Transforming the social practices of learning with representations: a study of disciplinary discourse. Research in Science Education, 43 (1), 179-208. doi: 10.1007/s11165-011-9263-0

Comparison of crop model validation methods

Cao, Hong-xin, Hanan, Jim Scott, Liu, Yan, Liu, Yong-xia, Yue, Yan-bin, Zhu, Da-wei, Lu, Jian-fei, Sun, Jin-ying, Shi, Chun-lin, Ge, Dao-kuo, Wei, Xiu-fang, Yao, An-qing, Tian, Ping-ping and Bao, Tai-lin (2012). Comparison of crop model validation methods. Journal of Integrative Agriculture, 11 (8), 1274-1285. doi: 10.1016/S2095-3119(12)60124-5

Models of long-distance transport: How is carrier-dependent auxin transport regulated in the stem?

Renton, Michael, Hanan, Jim, Ferguson, Brett J. and Beveridge, Christine A. (2012). Models of long-distance transport: How is carrier-dependent auxin transport regulated in the stem?. New Phytologist, 194 (3), 704-715. doi: 10.1111/j.1469-8137.2012.04093.x

Biomass-based rice (Oryza sativa L.) aboveground architectural parameter models

Cao, Hong-xin, Liu, Yan, Liu, Yong-xia, Hanan, Jim Scott, Yue, Yan-bin, Zhu, Da-wei, Lu, Jian-fei, Sun, Jin-ying, Shi, Chun-lin, Ge, Dao-kuo, Wei, Xiu-fang, Yao, An-qing, Tian, Ping-ping and Bao, Tai-lin (2012). Biomass-based rice (Oryza sativa L.) aboveground architectural parameter models. Journal of Integrative Agriculture, 11 (10), 1621-1632. doi: 10.1016/S2095-3119(12)60165-8

Towards aspect-oriented functional-structural plant modelling

Cieslak, Mikolaj, Seleznyova, Alla N., Prusinkiewicz, Przemyslaw and Hanan, Jim (2011). Towards aspect-oriented functional-structural plant modelling. Annals of Botany, 108 (6), 1025-1041. doi: 10.1093/aob/mcr121

A functional-structural kiwifruit vine model integrating architecture, carbon dynamics, and effects of the environment

Cieslak, Mikolaj, Seleznyova, Alla N. and Hanan, Jim (2011). A functional-structural kiwifruit vine model integrating architecture, carbon dynamics, and effects of the environment. Annals of Botany, 107 (5), 747-764. doi: 10.1093/aob/mcq180

A functional-structural modelling approach to autoregulation of nodulation

Han, Liqi, Gresshoff, Peter M. and Hanan, Jim (2011). A functional-structural modelling approach to autoregulation of nodulation. Annals of Botany, 107 (5), 855-863. doi: 10.1093/aob/mcq182

Pathogen dynamics in a crop canopy and their evolution under changing climate

Pangga, I. B., Hanan, J. and Chakraborty, S. (2011). Pathogen dynamics in a crop canopy and their evolution under changing climate. Plant Pathology, 60 (1), 70-81. doi: 10.1111/j.1365-3059.2010.02408.x

The movement and distribution of Helicoverpa armigera (Hübner) larvae on pea plants is affected by egg placement and flowering

Perkins, L. E, Cribb, B. W, Hanan, J and Zalucki, M. P (2010). The movement and distribution of Helicoverpa armigera (Hübner) larvae on pea plants is affected by egg placement and flowering. Bulletin of Entomological Research, 100 (5), 591-598. doi: 10.1017/S0007485309990654

Effects of plant micro-environment on movement of Helicoverpa armigera (Hübner) larvae and the relationship to a hierarchy of stimuli

Cribb, Bronwem W., Hanan, Jim, Zalucki, Myron P. and Perkins, Lynda E. (2010). Effects of plant micro-environment on movement of Helicoverpa armigera (Hübner) larvae and the relationship to a hierarchy of stimuli. Arthropod-Plant Interactions, 4 (3), 165-173. doi: 10.1007/s11829-010-9097-0

Analysis and modelling of the effects of water stress on maize growth and yield in dryland conditions

Song, Youhong, Birch, Colin, Qu, Shanshan, Doherty, Al and Hanan, Jim (2010). Analysis and modelling of the effects of water stress on maize growth and yield in dryland conditions. Plant Production Science, 13 (2), 199-208. doi: 10.1626/pps.13.199

Computational complementation: a modelling approach to study signalling mechanisms during legume autoregulation of nodulation

Han, Liqi, Hanan, Jim and Gresshoff, Peter M. (2010). Computational complementation: a modelling approach to study signalling mechanisms during legume autoregulation of nodulation. PloS Computational Biology, 6 (2) e1000685, e1000685-1-e1000685-8. doi: 10.1371/journal.pcbi.1000685

Maize canopy production under contrasted water regimes

Song, Y., Birch, C. J. and Hanan, J. (2010). Maize canopy production under contrasted water regimes. Annals of Applied Biology, 157 (1), 111-123. doi: 10.1111/j.1744-7348.2010.00412.x

Computational Modeling and Molecular Physiology Experiments Reveal New Insights into Shoot Branching in Pea

Dun, EA, Hanan, J and Beveridge, CA (2009). Computational Modeling and Molecular Physiology Experiments Reveal New Insights into Shoot Branching in Pea. PLANT CELL, 21 (11), 3459-3472. doi: 10.1105/tpc.109.069013

Computational analysis of flowering in pea (Pisum sativum)

Wenden, B, Dun, EA, Hanan, J, Andrieu, B, Weller, JL, Beveridge, CA and Rameau, C (2009). Computational analysis of flowering in pea (Pisum sativum). New Phytologist, 184 (1), 153-167. doi: 10.1111/j.1469-8137.2009.02952.x

Modelling the morphogenesis of annual sowthistle, a common weed in crops

Cici, S-Zahra-Hosseini, Adkins, S. and Hanan, J. (2009). Modelling the morphogenesis of annual sowthistle, a common weed in crops. Computers And Electronics In Agriculture, 69 (1), 40-45. doi: 10.1016/j.compag.2009.06.014

The role of two plant-derived volatiles in the foraging movement of 1st instar Helicoverpa armigera (Hübner): Time to stop and smell the flowers

Perkins, L.E., Cribb, B.W., Hanan, J. S. and Zalucki, M. P. (2009). The role of two plant-derived volatiles in the foraging movement of 1st instar Helicoverpa armigera (Hübner): Time to stop and smell the flowers. Arthropod - Plant Interactions, 3 (3), 173-179. doi: 10.1007/s11829-009-9069-4

Where to From Here? The Mechanisms Enabling the Movement of First Instar Caterpillars on Whole Plants Using Helicoverpa armigera (Hübner)

Perkins, Lynda E., Cribb, Bronwen W., Hanan, Jim, Glaze, Ezekiel, Beveridge, Christine and Zalucki, Myron P. (2008). Where to From Here? The Mechanisms Enabling the Movement of First Instar Caterpillars on Whole Plants Using Helicoverpa armigera (Hübner). Arthropod-Plant Interactions, 2 (4), 197-207. doi: 10.1007/s11829-008-9047-2

Foreword: studying plants with functional–structural models

Hanan, Jim and Prusinkiewicz, Prezemyslaw (2008). Foreword: studying plants with functional–structural models. Functional Plant Biology, 35 (10), vi-viii. doi: 10.1071/FPv35n10_FO

A canopy architectural model to study the competitive ability of chickpea with sowthistle

Cici, S-Zahra-Hosseini, Adkins, Steve and Hanan, Jim (2008). A canopy architectural model to study the competitive ability of chickpea with sowthistle. Annals of Botany, 101 (9), 1311-1318. doi: 10.1093/aob/mcn040

Analysis of maize canopy development under water stress and incorporation into the ADEL-Maize model

Song, Youhong, Birch, Colin J. and Hanan, James S. (2008). Analysis of maize canopy development under water stress and incorporation into the ADEL-Maize model. Functional Plant Biology, 35 (9-10), 925-935. doi: 10.1071/FP08055

Modeling the fitness of plant morphologies across three levels of complexity

Watson, James, Hanan, Jim and Wiles, Janet (2008). Modeling the fitness of plant morphologies across three levels of complexity. Biosystems, 94 (1-2), 182-190. doi: 10.1016/j.biosystems.2008.05.023

Quasi-Monte Carlo simulation of the light environment of plants

Cieslak, M., Lemieux, C., Hanan, J. S. and Prusinkiewicz, P. (2008). Quasi-Monte Carlo simulation of the light environment of plants. Functional Plant Biology, 35 (9 & 10), 837-849. doi: 10.1071/FP08082

Spray deposition on plant surfaces: a modelling approach

Dorr, Gary, Hanan, Jim, Adkins, Steve, Hewitt, Andrew, O'Donnell, Chris and Noller, Barry (2008). Spray deposition on plant surfaces: a modelling approach. Functional Plant Biology, 35 (9/10), 988-996. doi: 10.1071/FP08056

L-DONAX, a growth model of the invasive weed species, Arundo donax L.

Thornby, D., Spencer, D., Hanan, J. and Sher, A (2007). L-DONAX, a growth model of the invasive weed species, Arundo donax L.. Aquatic Botany, 87 (4), 275-284. doi: 10.1016/j.aquabot.2007.06.012

Modelling predicts positive and negative interactions between three Australian tropical tree species in monoculture and binary mixture

Manson, Daniel G., Hanan, Jim, Hunt, Mark, Bristow, Mila, Erskine, Peter D., Lamb, David and Schmidt, Susanne (2006). Modelling predicts positive and negative interactions between three Australian tropical tree species in monoculture and binary mixture. Forest Ecology And Management, 233 (2-3), 315-323. doi: 10.1016/j.foreco.2006.05.028

A standardized method for analysis of Medicago truncatula phenotypic development

Bucciarelli, Bruna, Hanan, Jim, Palmquist, Debra and Vance, Carroll P. (2006). A standardized method for analysis of Medicago truncatula phenotypic development. Plant Physiology, 142 (1), 207-219. doi: 10.1104/pp.106.082594

Functional-structural plant modelling using a combination of architectural analysis, L-systems and a canonical model of function

Renton, M, Kaitaniemi, P and Hanan, J (2005). Functional-structural plant modelling using a combination of architectural analysis, L-systems and a canonical model of function. Ecological Modelling, 184 (2-4), 277-298. doi: 10.1016/j.ecolmodel.2004.10.008

Rice morphogenesis and plant architecture: Measurement, specification and the reconstruction of structural development by 3D architectural modelling

Watanabe, T., Hanan, J.S., Room, P.M., Hasegawa, T., Nakagawa, H. and Takahashi, W. (2005). Rice morphogenesis and plant architecture: Measurement, specification and the reconstruction of structural development by 3D architectural modelling. Annals of Botany, 95 (7), 1131-1143. doi: 10.1093/aob/mci136

Using the canonical modelling approach to simplify the simulation of function in functional-structural plant models

Renton, M, Hanan, J and Burrage, K (2005). Using the canonical modelling approach to simplify the simulation of function in functional-structural plant models. New Phytologist, 166 (3), 845-857. doi: 10.1111/j.1469-8137.2005.01330.x

Linking physiological and architectural models of cotton

Hanan, J. S. and Hearn, A. B. (2003). Linking physiological and architectural models of cotton. Agricultural Systems, 75 (1), 47-77. doi: 10.1016/S0308-521X(01)00114-7

Partial automation of database processing of simulation outputs from L-systems models of plant morphogenesis

Chen, YPP and Hanan, J (2002). Partial automation of database processing of simulation outputs from L-systems models of plant morphogenesis. Biosystems, 65 (2-3), 187-197. doi: 10.1016/S0303-2647(02)00017-5

Simulation of insect movement with respect to plant architecture and morphogenesis

Hanan, J., Prusinkiewicz, P., Zalucki, M. and Skirvin, D. (2002). Simulation of insect movement with respect to plant architecture and morphogenesis. Computers And Electronics In Agriculture, 35 (2-3), 255-269. doi: 10.1016/S0168-1699(02)00022-4

An L-system-based plant modeling language

Prusinkiewiez, P, Hanan, J and Mech, R (2000). An L-system-based plant modeling language. Applications of Graph Transformations With Industrial Relevance, Proceedings, 1779, 395-410.

L-studio/cpfg: A software system for modeling plants

Prusinkiewicz, P, Karwowski, R, Mech, R and Hanan, J (2000). L-studio/cpfg: A software system for modeling plants. Applications of Graph Transformations With Industrial Relevance, Proceedings, 1779, 457-464.

Virtual sorghum: visualisation of partitioning and morphogenesis

Kaitaniemi, P., Hanan, J. S. and Room, P. M. (2000). Virtual sorghum: visualisation of partitioning and morphogenesis. Computers and Electronics in Agriculture, 28 (3), 195-205. doi: 10.1016/S0168-1699(00)00126-5

Using Lindenmayer systems to model morphogenesis in a tropical pasture legume Stylosanthes scabra

Wilson, Peter A., Hanan, James S., Room, Peter M., Chakraborty, Sukumar and Doley, David (1999). Using Lindenmayer systems to model morphogenesis in a tropical pasture legume Stylosanthes scabra. Canadian Journal of Botany-revue Canadienne De Botanique, 77 (3), 394-403. doi: 10.1139/b98-217

Architecture and morphogenesis of grain sorghum, Sorghum bicolor (L.) Moench

Kaitaniemi, P, Room, PM and Hanan, JS (1999). Architecture and morphogenesis of grain sorghum, Sorghum bicolor (L.) Moench. Field Crops Research, 61 (1), 51-60. doi: 10.1016/S0378-4290(98)00148-8

Virtual plants - integrating architectural and physiological models

Hanan, J (1997). Virtual plants - integrating architectural and physiological models. Environmental Modelling & Software, 12 (1), 35-42. doi: 10.1016/S1364-8152(96)00040-0

Virtual plants: New perspectives for ecologists, pathologists and agricultural scientists

Room, PM, Hanan, JS and Prusinkiewicz, P (1996). Virtual plants: New perspectives for ecologists, pathologists and agricultural scientists. Trends in Plant Science, 1 (1), 33-38. doi: 10.1016/S1360-1385(96)80021-5

Module and Metamer Dynamics and Virtual Plants

Room, PM, Maillette, L and Hanan, JS (1994). Module and Metamer Dynamics and Virtual Plants. Advances in Ecological Research, Vol 25, 25, 105-157. doi: 10.1016/S0065-2504(08)60214-7

The virtual museum: Interactive 3D navigation of a multimedia database

Miller, Gavin, Hoffert, Eric, Chen, Shenchang Eric, Patterson, Elizabeth, Blackketter, Dean, Rubin, Steve, Applin, Sally Ann, Yim, Derrick and Hanan, Jim (1992). The virtual museum: Interactive 3D navigation of a multimedia database. The Journal of Visualization and Computer Animation, 3 (3), 183-197. doi: 10.1002/vis.4340030305

Modeling Spiral Phyllotaxis

Fowler, DR, Hanan, J and Prusinkiewicz, P (1989). Modeling Spiral Phyllotaxis. Computers & Graphics, 13 (3), 291-296. doi: 10.1016/0097-8493(89)90076-9

Development models of herbaceous plants for computer imagery purposes

Prusinkiewicz, Przemyslaw, Lindenmayer, Aristid and Hanan, James (1988). Development models of herbaceous plants for computer imagery purposes. Computer Graphics (ACM), 22 (4), 141-150. doi: 10.1145/378456.378503

Investigating the effects of planting density and tree size on yield through functional-structural modeling

Auzmendi, I. and Hanan, J. (2020). Investigating the effects of planting density and tree size on yield through functional-structural modeling. XXX International Horticultural Congress IHC2018: International Symposium on Cultivars, Rootstocks and Management Systems of Deciduous Fruit and Fruit Tree Behaviour in Dynamic Environments, Istanbul, Turkey, 12-16 August 2018. Leuven, Belgium: International Society for Horticultural Science. doi: 10.17660/ActaHortic.2020.1281.69

Using L-studio to visualize data and modify plant architecture for agronomic purposes: visualization and modification of plant architecture with L-studio

Auzmendi, Inigo and Hanan, Jim (2019). Using L-studio to visualize data and modify plant architecture for agronomic purposes: visualization and modification of plant architecture with L-studio. 6th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA 2018), Hefei, China, 4-8 November 2018. New York, NY, United States: Institute of Electrical and Electronics Engineers (IEEE). doi: 10.1109/PMA.2018.8611586

Can greater understanding of macadamia canopy architecture lay the foundation for orchard productivity improvements?

Toft, B.D., Hanan, J. S., Topp, B., Auzmendi, I. and Wilkie, J.D. (2018). Can greater understanding of macadamia canopy architecture lay the foundation for orchard productivity improvements?. XI International Symposium on Integrating Canopy, Rootstock and Environmental Physiology in Orchard Systems, Geneva, NY United States, 28 August - 2 September 2016. Leuven, Belgium: International Society for Horticultural Science. doi: 10.17660/actahortic.2018.1228.7

Carbon transport revisited: a novel approach for solving quasi-stationary carbon transport in a system with Michaelis-Menten sources and sinks

Seleznyova, A. N. and Hanan, J. (2017). Carbon transport revisited: a novel approach for solving quasi-stationary carbon transport in a system with Michaelis-Menten sources and sinks. X International Symposium on Modelling in Fruit Research and Orchard Management, Montpellier, France, 2 - 5 June 2015. Leuven, Belgium: International Society for Horticultural Science. doi: 10.17660/ActaHortic.2017.1160.39

Modeling bi-directional signals in complex branching structure: application to the control of floral induction in apple trees

Pallas, Benoit, Costes, Evelyne and Hanan, Jim (2017). Modeling bi-directional signals in complex branching structure: application to the control of floral induction in apple trees. 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications, FSPMA 2016, Qingdao, China, 7 - 11 November 2016. Piscataway, NJ, United States: Institute of Electrical and Electronics Engineers. doi: 10.1109/FSPMA.2016.7818301

Modeling final leaf length as a function of carbon availability during the elongation period

Auzmendi, I. , Hanan, J, Da Silva, D. , Favreau, R. and DeJong, T. M. (2017). Modeling final leaf length as a function of carbon availability during the elongation period. X International Symposium on Modelling in Fruit Research and Orchard Management, Montpellier, France, 2-5 June 2015. Leuven, Belgium: International Society for Horticultural Science. doi: 10.17660/ActaHortic.2017.1160.11

Orchard level simulation of fruit tree light interception

Han, Liqi, Hanan, J. and Costes, E. (2017). Orchard level simulation of fruit tree light interception. X International Symposium on Modelling in Fruit Research and Orchard Management, Montpellier, France, 2-5 June 2015. Leuven, Belgium: International Society for Horticultural Science. doi: 10.17660/ActaHortic.2017.1160.38

A model of macadamia with application to pruning in orchards

White, N. and Hanan, J. (2016). A model of macadamia with application to pruning in orchards. ISHS Acta Horticulturae 1109: XXIX International Horticultural Congress on Horticulture: Sustaining Lives, Livelihoods and Landscapes (IHC2014): International Symposium on Nut Crops, Brisbane, Australia, 17 August 2014. LEUVEN 1: International Society for Horticultural Science. doi: 10.17660/ActaHortic.2016.1109.12

Carbohydrate sources for macadamia shoot development

Karimaei, S. and Hanan, J. (2016). Carbohydrate sources for macadamia shoot development. XXIX International Horticultural Congress on Horticulture: Sustaining Lives, Livelihoods and Landscapes (IHC2014): International Symposium on Nut Crops, Brisbane, Australia , 17-22 August 2014. Leuven, Belgium: International Society for Horticultural Science. doi: 10.17660/ActaHortic.2016.1109.10

Pattern-oriented modelling of plant architecture: a new approach for constructing functional-structural plant models

Wang, Ming, Thorp, Grant, Hofman, Helen, White, Neil, Wherritt, Ella and Hanan, Jim (2016). Pattern-oriented modelling of plant architecture: a new approach for constructing functional-structural plant models. IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA), Qingdao, China, 7-11 November 2016. Piscataway, NJ, United States: IEEE. doi: 10.1109/FSPMA.2016.7818308

Potential role of 3D modelling of canopy architecture to explore G x E x M interactions in wheat

Evers, Jochem B., Moeller, Carina and Hanan, Jim (2015). Potential role of 3D modelling of canopy architecture to explore G x E x M interactions in wheat. 17th Australian Agronomy Conference 2015, Hobart, Australia, 20 – 24 September 2015. Warragul, Australia: Australian Society of Agronomy.

Spatially explicit individual-based modelling of insect- plant interactions: effects of level of detail in Queensland fruit fly models

Wang, Ming, Cribb, Bronwen, Auzmendi, Inigo and Hanan, Jim (2015). Spatially explicit individual-based modelling of insect- plant interactions: effects of level of detail in Queensland fruit fly models. International Congress on Modelling and Simulation, Gold Coast, QLD, Australia, 29 November to 4 December 2015. Gold Coast, QLD, Australia: MSSANZ.

Using Z in the development and maintenance of computational models of real-world systems

Moeiniyan Bagheri, Shahrzad, Smith, Graeme and Hanan, Jim (2015). Using Z in the development and maintenance of computational models of real-world systems. 12th International Conference on Software Engineering and Formal Methods, Grenoble, France, 1 - 2 September 2014. Heidelberg, Germany: Springer Verlag. doi: 10.1007/978-3-319-15201-1_3

On the use of marker data to determine the kinetics of the digestive behaviour of feeds

Belward, J. A., Hanan, J. S., Williams, B. A., Gerrits, W. J J and Gidley, M. J. (2013). On the use of marker data to determine the kinetics of the digestive behaviour of feeds. 16th biennial Computational Techniques and Applications Conference (CTAC2012), Brisbane, QLD, Australia, 23 - 26 September, 2012. Cambridge, United Kingdom: Cambridge University Press. doi: 10.21914/anziamj.v54i0.6400

A self-organising model of Macadamia with application to pruning in orchards

White, Neil A. and Hanan, Jim (2013). A self-organising model of Macadamia with application to pruning in orchards. 7th International Conference on Functional-Structural Plant Models (FSPM 2013), Saariselkä, Finland, 9-14 June 2013. Vantaa, Finland: Finnish Society of Forest Science.

Functional-structural modelling with L-systems: where from and where to

Hanan, Jim (2013). Functional-structural modelling with L-systems: where from and where to. 7th International Conference on Functional-Structural Plant Models (FSPM 2013), Saariselkä, Finland, 9-14 June 2013. Vantaa, Finland: Finnish Society of Forest Science.

Modeling parthenium weed early canopy architecture in response to environmental factors and the impacts on biological control activity of the summer rust

Toh, Ruey, Dhileepan, Kunjithapatham, Shivas, Roger G., Adki, Steve W. and Hanan, Jim (2013). Modeling parthenium weed early canopy architecture in response to environmental factors and the impacts on biological control activity of the summer rust. 7th International Conference on Functional-Structural Plant Models (FSPM 2013), Saariselkä, Finland, 9-14 June 2013. Vantaa, Finland: Finnish Society of Forest Science.

Functional structural plant modelling: Applications beyond the plant

Hanan, Jim (2012). Functional structural plant modelling: Applications beyond the plant. 4th International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, PMA 2012, Shanghai, Peoples R China, 31 October - 3 November 2012. Piscataway, NJ United States: I E E E. doi: 10.1109/PMA.2012.6524803

Linking in vitro and in vivo models of digestion: a computational modelling approach

Hanan, Jim, Belward, John, Williams, Barbara A., Shelat, Kinnari and Gidley, Michael J. (2012). Linking in vitro and in vivo models of digestion: a computational modelling approach. Food Structures, Digestion and Health Conference 2012, Palmerston North, New Zealand, 7-9 March 2012.

An in vitro technique to model digestive behavior of feeds containing soluble fibers

Williams, B. A., Shelat, K., Hanan, J., Dhital, S. and Gidley, M. J. (2011). An in vitro technique to model digestive behavior of feeds containing soluble fibers. 12th International Symposium on Digestive Physiology in Pigs, Keystone, CO, United States, 29 May - 1 June 2012.

Simulation of parthenium weed canopy under changing climate using L-systems

Toh, R., Hanan, J., Dhileepan, K., Shivas, R. G. and Adkins, S. W. (2011). Simulation of parthenium weed canopy under changing climate using L-systems. 19th International Congress on Modelling and Simulation (MODSIM2011), Perth, Australia, 12-16 December 2011. Canberra, ACT., Australia: Modelling and Simulation Society of Australia and New Zealand.

A functional-structural kiwifruit vine model

Cieslak, M., Seleznyova, A.N. and Hanan, J. (2010). A functional-structural kiwifruit vine model. Plant Growth Modelling and Applications 2009, Beijing, China, 9-13 November, 2009. Los Alamitos, CA, USA: IEEE Computer Society. doi: 10.1109/PMA.2009.13

Modelling root development with signalling control: A case study based on legume autoregulation of nodulation

Han, L., Gresshoff, P. M. and Hanan, J. (2010). Modelling root development with signalling control: A case study based on legume autoregulation of nodulation. 3rd International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, PMA09, Beijiing, China, Nov. 09-13, 2009. United States: IEEE. doi: 10.1109/PMA.2009.40

Emergent models in a multi-level biochemical network regulating pea flowering

Stolk, Jacob and Hanan, Jim (2009). Emergent models in a multi-level biochemical network regulating pea flowering. IMACS World Congress/Modelling and Simulation Society-of-Australia-and-New-Zealand (MSSANZ)/18th MODSIM09 Biennial Conference on Modelling and Simulation, Cairns, Australia, 13-17 July 2009. Christchurc, New Zealand: Modelling and Simulation Society of Australia and New Zealand.

Architectural modeling of maize under water stress

Birch, Colin J., Thornby, David, Adkins, Steve, Andrieu, Bruno and Hanan, Jim (2008). Architectural modeling of maize under water stress. Maize Association of Australia 6th Triennial Conference, Griffith, NSW, Austrlia, 21-23 February 2006. Collingwood, VIC, Australia: CSIRO Publishing. doi: 10.1071/EA06105

Canonical modelling

Renton, M., Thornby, D. and Hanan, J. (2007). Canonical modelling. Workshop on Functional-Structural Plant Modelling in Crop Production, Wageningen, Netherlands, 5-8 March 2006. Dordrecht, Netherlands: Springer.

Computational approaches for studying signaling mechanisms behind legume autoregulation of nodulation

Han, L., Gresshoff, P. M. and Hanan, J. (2007). Computational approaches for studying signaling mechanisms behind legume autoregulation of nodulation. Bioinformatics Australia 2007, Brisbane, Australia, 23-24 October, 2007. Australia:

Computational models for inquiry learning in biology

Hanan, J., Beveridge, C. A. and Nichols, K. C. (2007). Computational models for inquiry learning in biology. CSIRO Transformational Biology Workshop, Black Mountain, Australia, 18-20 June, 2007. CSIRO.

Computational models for studying signaling control mechanisms behind legume autoregulation of nodulation

Han, Liqi, Gresshoff, Peter M. and Hanan, Jim (2007). Computational models for studying signaling control mechanisms behind legume autoregulation of nodulation. 8th Asia-Pacific Complex Systems Conference, Gold Coast, Australia, 2-7 July, 2007.

Development of a Decision-Making Tool to Minimize Environmental and Public Health Risk of Pesticide Application

Dorr, G., Noller, B. N., Woods, N., Hewitt, A. J., Hanan, J. S., Adkins, S. W. and Ricci, P. F. (2007). Development of a Decision-Making Tool to Minimize Environmental and Public Health Risk of Pesticide Application. International Chemical Congress of Pacific Basin Societies (PACIFICHEM 2005), Honolulu, HI, 15-20 Dec 2005. Washington, D.C.: American Chemical Society. doi: 10.1021/bk-2007-0966.ch004

Discovering genetic regulatory network models in Pisum sativum

Stolk, H. and Hanan, J. S. (2007). Discovering genetic regulatory network models in Pisum sativum. MODSIM 2007: International Congress on Modelling and Simulation, Christchurch, New Zealand, 10-13 December 2007. Christchurch, New Zealand: Modelling and Simulation Society of Australia and New Zealand.

Hypothesis-driven computational modelling of the shoot branching control network in pea

Dun, E., Hanan, J. and Beveridge, C. A. (2007). Hypothesis-driven computational modelling of the shoot branching control network in pea. CSIRO Transformational Biology Workshop, Black Mountain, Australia, 18-20 June, 2007. CSIRO.

Interaction of crops, weeds and the environment: 3D architectural modeling and visualization for improved integrated weed management

Gaur, S., Adkins, S. W., Dorr, G. and Hanan, J. (2007). Interaction of crops, weeds and the environment: 3D architectural modeling and visualization for improved integrated weed management. 21st Asian Pacific Weed Science Society (APWSS) Conference, Colombo, Sri Lanka, 2-6 October 2007. Colombo, Sri Lanka: University of Peradeniya and Chemical Industries.

Modeling the Interaction of Plant Architecture and Spray Techniques

Dorr, Gary J., Hanan, Jim, Hewitt, Andrew J., Adkins, Steve and Noller, Barry N. (2007). Modeling the Interaction of Plant Architecture and Spray Techniques. 2007 ASABE Annual International Meeting, Minneapolis, Minnesota, 17-20 June, 2007. St. Joseph, Michigan: American Society of Agricultural and Biological Engineers.

Optimisation of herbicide deposition and retention using computer modeling validated through wind tunnel studies

Dorr, S., Adkins, S., Hanan, J., O'Donnell, C., Hewitt, A. and Noller, B. (2007). Optimisation of herbicide deposition and retention using computer modeling validated through wind tunnel studies. 21st Asian Pacific Weed Science Society (APWSS) Conference, Colombo, Sri Lanka, 2-6 October 2007. Colombo, Sri Lanka: University of Peradeniya and Chemical Industries.

Subpopulation agents emerge from individual agents in metapopulation simulations

Stolk, H. J., Hanan, J. and Zalucki, M. P. (2007). Subpopulation agents emerge from individual agents in metapopulation simulations. International Congress on Modelling and Simulation Land, Water & Environmental Management: Integrated Systems for Sustainability, Christchurch, New Zealand, 10-13 December 2007. ACT, Canberra: The modelling and simulation society of Australia and New Zealand Inc..

Subpopulation agents emerge from individual agents in metapopulation simulations

Stolk, H. J., Hanan, J. and Zalucki, M. P. (2007). Subpopulation agents emerge from individual agents in metapopulation simulations. International Congress on Modelling and Simulation (MODSIM07), Christchurch New Zealand, 10-13 December 2007. Christchurch New Zealand: Modelling and Simulation Society of Australia and New Zealand.

Virtual soybean—a computational model for studying autoregulation of nodulation

Han, Liqi, Gresshoff, Peter M. and Hanan, Jim (2007). Virtual soybean—a computational model for studying autoregulation of nodulation. FSPM07: 5th International Workshop on Functional Structural Plant Models, Napier, New Zealand, 4-9 November, 2007. Napier, New Zealand: FSPM.

3D modelling of cicer arietinum architecture and phenology: relating phenotype to genotype

Hosseini Cici, S. Z., Adkins, S W and Hanan, J S (2006). 3D modelling of cicer arietinum architecture and phenology: relating phenotype to genotype. Genes to Crops, Brisbane Convention & Exhibition Centre, 9-13 April 2006. Brisbane: ARC Centre of Excellence.

A decision-making tool to minimise environmental and public health risk of pesticide application

Dorr, G. J., Noller, B N, Hewitt, A J, Hanan, J S and Adkins, S W (2006). A decision-making tool to minimise environmental and public health risk of pesticide application. 6th Annual Health and Medical Research conference of Queensland, Hilton Hotel, Brisbane, 23-24 November 2006. Brisbane, QLD: Queensland Government.

Canopy interference of chickpea with sowthistle - model development

Hosseini Cici, S. Z., Adkins, S. W., Sindel, M. and Hanan, J. S. (2006). Canopy interference of chickpea with sowthistle - model development. Managing Weeds in a Changing Climate, Adelaide Convention Centre, SA, 24-28 September, 2006. Meredith, Vic: Weed Management Society of South Australia Inc.

Phenotypic plasticity of sowthistle and its offspring in response to light availability

Hosseini Cici, S. Z., Hanan, J. S., Sindel, M. and Adkins, S. W. (2006). Phenotypic plasticity of sowthistle and its offspring in response to light availability. 15th Australian Weeds Conference: Managing Weeds in a Changing Climate, Adelaide Convention Centre, SA, 24-28 September 2006. Meredith, Vic., Australia: Weed Management Society of South Australia.

Simulating spray deposition on plant canopies within a wind tunnel

Dorr, G. J., Hanan, J. S., Woods, N., Kleinmeulman, P. A., Adkins, S. W. and Noller, B. N. (2006). Simulating spray deposition on plant canopies within a wind tunnel. International Advances in Pesticide Application 2006 conference, Robinson Collee, Cambridge, England, 9-11 January, 2006. Warwick, United Kingdom: Association of Applied Biologists.

Agent-based virtual insects

Duczmal, Katherine, Robinson, Peter and Hanan, Jim (2005). Agent-based virtual insects. Proceedings of the Australian Undergraduate Students’ Computing Conference 2005, Canberra, Australia, 28-29 November, 2005. Canberra, ACT Australia: Australian Undergraduate Students' Computing Conference (AUSCC).

Application of Surface Fitting Techniques for the Representation of Leaf Surfaces

Loch, B. I., Belward, J. A. and Hanan, J. S. (2005). Application of Surface Fitting Techniques for the Representation of Leaf Surfaces. International Congress on Modelling and Simulation (MODSIM05), Melbourne Australia, Dec 12-15, 2005. CHRISTCHURCH: MODELLING & SIMULATION SOC AUSTRALIA & NEW ZEALAND INC.

Application of Surface Fitting Techniques for the Representation of Leaf Surfaces

Loch, B.I., Belward, J.A. and Hanan, J.S. (2005). Application of Surface Fitting Techniques for the Representation of Leaf Surfaces. MODSIM05, University of Melbourne, 12-15 December 2005. Canberra: Modelling and Simulation Society of Australia and New Zealand.

Combining Spray Drift and Plant Architecture Modeling to Minimise Environmental and Public Health Risk of Pesticide Application

Dorr, G. J., Hanan, J., Woods, N., Adkins, S., Kleinmeulman, P., Ricci, P. and Noller, B. (2005). Combining Spray Drift and Plant Architecture Modeling to Minimise Environmental and Public Health Risk of Pesticide Application. International Congress on Modelling and Simulation (MODSIM05), Melbourne Australia, Dec 12-15, 2005. NEDLANDS: UNIV WESTERN AUSTRALIA.

Combining spray drift and plant architecture modeling to minimise environmental and public health risk of pesticide application

Dorr, G. J., Hanan, J., Woods, N., Adkins, S., Kleinmeulman, P., Ricci, P. and Noller, B. (2005). Combining spray drift and plant architecture modeling to minimise environmental and public health risk of pesticide application. MODSIM05 International Congress on Modelling and Simulation, Melbourne, Australia, 12-15 December 2005. Canberra, Australia: Modelling and Simulation Society of Aust and New Zealand.

Development of a decision-making tool to minimise environmental and public health risk of pesticide application

Dorr, G. J., Noller, B., Hanan, J., Adkins, Stephen W., Woods, N., Hewitt, A. and Ricci, P. (2005). Development of a decision-making tool to minimise environmental and public health risk of pesticide application. 2005 International Chemical Congress of Pacific Basin, Honolulu, Hawaii, USA, 15-20 December, 2005.

Minimising environmental and public health risk from the application of pesticides through a better undersanding of the droplet canopy interface

Dorr, G. J., Noller, B. N., Hanan, J., Woods, N. and Adkins, S. W. (2005). Minimising environmental and public health risk from the application of pesticides through a better undersanding of the droplet canopy interface. 5th Annual Health and Medical Research Conference of Queensland, Brisbane, Queensland, 3-4 November, 2005. Brisbane, Queensland: Queensland Health.

Modelling Cotton Plant Development with L-systems: A template model for incorporating physiology

Hanan, J., Thornby, D. and Adkins, S. (2005). Modelling Cotton Plant Development with L-systems: A template model for incorporating physiology. International Congress on Modelling and Simulation (MODSIM05), Melbourne Australia, Dec 12-15, 2005. NEDLANDS: UNIV WESTERN AUSTRALIA.

Modelling cotton plant development with L-systems: A template model for incorporating physiology

Hanan, J., Thornby, D. and Adkins, S. (2005). Modelling cotton plant development with L-systems: A template model for incorporating physiology. MODSIM05 International Congress on Modelling and Simulation, Melbourne, Australia, 12-15 December 2005. Canberra, Australia: Modelling and Simulation Society of Australia and New Zealand.

Towards a network pattern language for complex systems

Watson, J. R., Hawkins, J. C., Bradley, D. R., Dassanayake, D., Wiles, J. H. and Hanan, J. S. (2005). Towards a network pattern language for complex systems. Australian Conference on Artificial Life (ACAL'05), Sydney, Australia, 5-9 December 2005. Singapore: World Scientific Publishing.

Using L-systems To Simulate Chickpea Cultivars And Their Shading Abilities

Cici, S. Z. H., Sindel, B. M., Adkins, S. and Hanan, J. (2005). Using L-systems To Simulate Chickpea Cultivars And Their Shading Abilities. International Congress on Modelling and Simulation (MODSIM05), Melbourne Australia, Dec 12-15, 2005. NEDLANDS: UNIV WESTERN AUSTRALIA.

Using L-systems to simulate chickpea cultivars and their shading abilities

Cici, S. Z. H., Sindel, B. M., Adkins, S. and Hanan, J. (2005). Using L-systems to simulate chickpea cultivars and their shading abilities. MODSIM05 International Congress on Modelling and Simulation, Melbourne, Australia, 12-15 December 2005. Canberra, Australia: Modelling and Simulation Society of Australia and New Zealand.

Wind Tunnel Spray Drift Measurements and Modeling

Dorr, G. J., Woods, N., O'Donnell, C. C., Hanan, J., Noller, B. N. and Adkins, S. W. (2005). Wind Tunnel Spray Drift Measurements and Modeling. Science Week at QHSS 2005, Brisbane, Queensland, 15-19 August, 2005. Brisbane, Queensland: EnTox, The University of Queensland.

A canonical toolkit for modelling plant function

Renton, M., Hanan, J. S. and Burrage, K. (2004). A canonical toolkit for modelling plant function. 4th International Workshop on Functional-Structural Plant Models, Montpellier, France, 7-11 June, 2004. Montpellier, France: UMR AMAP.

A modelling exploration of branch extension, defoliation responses, and carbohydrate physiology in cotton (Gossypium hirsutum L.)

Thornby, D. F. and Hanan, J. S. (2004). A modelling exploration of branch extension, defoliation responses, and carbohydrate physiology in cotton (Gossypium hirsutum L.). 4th International Workshop on Functional-Structural Plant Models, Montpellier, France, 7-11 June, 2004. Montpellier, France: UMR AMAP.

An experimental wind tunnel facility to study the exposure and effect of aerosols containing pesticides biota

Noller, B. N., Woods, N., Adkins, S. W. and Hanan, J. S. (2004). An experimental wind tunnel facility to study the exposure and effect of aerosols containing pesticides biota. Contaminants and Ecological Risk Assessment, Adelaide, Australia, 5-7 April, 2004. Glen Osmond, SA: CSIRO.

Application of an experimental wind tunnel facility to study the exposure and effect of aerosols containing pesticides on biota

Noller, B. N., Woods, N., Adkins, S. W. and Hanan, J. S. (2004). Application of an experimental wind tunnel facility to study the exposure and effect of aerosols containing pesticides on biota. Interact 2004, Conrad Jupiters Gold Coast, Australia, 4-8 July, 2004. Brisbane, Australia: Interact 2004.

Auxin comes too little too late

Morris, S., Ross, T., Cox, M., Renton, M., Hanan, J. and Beveridge, C. A. (2004). Auxin comes too little too late. IPGSA, Canberra, Australia, September 2004.

Combining spray drift and plant architecture modelling

Dorr, G. J., Hanan, J. S., Woods, N., Kleinmeulman, P. A., Adkins, S. W. and Noller, B. N. (2004). Combining spray drift and plant architecture modelling. Intern'l Conf on Pesticide Application for Drift Management, Hawaii/ Hilton Waikoloa Village, 27-29 October 2004. Pullman, Washington: Washington State University Extension.

Comparing droplet size and velocity of different hydraulic nozzle spray plumes

Kleinmeulman, P. A., Dorr, G. J., Woods, N., Hewitt, A. J., Noller, B. N., Hanan, J. S. and Adkins, S. W. (2004). Comparing droplet size and velocity of different hydraulic nozzle spray plumes. Intern'l Conf on Pesticide Application for Drift Management, Hawaii/Hilton Waikoloa Village, 27-29 October 2004. Pullman, Washington: Washington State Unviersity Extension.

Floradig: a configurable program for capturing plant architecture

Hanan, J. S. and Wang, Y. (2004). Floradig: a configurable program for capturing plant architecture. 4th International Workshop on Functional-Structural Plant Models, Montpellier, France, 7-11 June, 2004. Montpellier, France: UMR AMAP.

Hypothesis driven modelling of long-distance signalling and plant development

Beveridge, Christine, Harding, Elizabeth, Renton, Michael, Bell, Paul, Parmenter, Kathy and Hanan, Jim (2004). Hypothesis driven modelling of long-distance signalling and plant development. 4th International Workshop on Functional-Structural Plant Models (FSPM 04), Montpellier, France, 7-11 June, 2004. Montpellier, France: UMR AMAP.

Lighting virtual crops: the CARIBU solution for open L-Systems

Chelle, M., Hanan, J. S. and Autret, H. (2004). Lighting virtual crops: the CARIBU solution for open L-Systems. 4th International Workshop on Functional-Structural Plant Models, Montpellier, France, 7-11 June, 2004. Montpellier, France: UMR AMAP.

Minimising environmental and public health risk of pesticide application through understanding the droplet-canopy interface

Dorr, G. J., Kleinmeulman, P. A., Noller, B. N., Woods, N., Hanan, J. S. and Adkins, S. W. (2004). Minimising environmental and public health risk of pesticide application through understanding the droplet-canopy interface. Quality Cotton - A Living Industry, Gold Coast/Convention and Exhibition Centre, 10-12 August 2004. Gold Coast: Australian Cotton Growers Research Association Inc.

Minimising environmental and public health risk of pesticide application through understanding the droplet-canopy interface

Dorr, G. J., Kleinmeulman, P. A., Noller, B. N., Woods, N., Hanan, J. S. and Adkins, S. W. (2004). Minimising environmental and public health risk of pesticide application through understanding the droplet-canopy interface. 4th Annual Queensland Health and Medical Scientific Meeting, Brisbane/Convention and Exhibition Centre, 30 November - 1 December 2004. Brisbane: Qld Government.

Modelling cotton (Gossypium hirsutum L.) with L-systems: A template model for incorporating physiology

Hanan, J. S. (2004). Modelling cotton (Gossypium hirsutum L.) with L-systems: A template model for incorporating physiology. 4th International Workshop on Functional-Structural Plant Models, Montpellier, France, 7-11 June, 2004. Montpellier, France: UMR AMAP.

Modelling wind tunnel drift measurements

Dorr, G. J., Woods, N., Hewitt, A. J., Hanan, J. S., Kleinmeulman, P. A. and Adkins, S. W. (2004). Modelling wind tunnel drift measurements. Intern'l Conf on Pesticide Application for Drift Management, Hawaii/Hilton Waikoloa Village, 27-29 October 2004. Pullman, Washington: Washington State University Extension.

Processing laser scanner plant data to extract structural information

Hanan, J. S., Loch, B. I. and McAleer, T. D. (2004). Processing laser scanner plant data to extract structural information. 4th International Workshop on Functional-Structural Plant Models, Montpellier, France, 7-11 June, 2004. Montpellier, France: UMR AMAP.

Statistical data directed evolution of L-system models for botanical trees

Runqiang, B., Hanan, J. S. and Chiba, N. (2004). Statistical data directed evolution of L-system models for botanical trees. 4th International Workshop on Functional-Structural Plant Models, Montpellier, France, 7-11 June, 2004. Montpellier, France: UMR AMAP.

Visual programming for building plant models

Hanan, J. S. and Auf Der Maur, S. (2004). Visual programming for building plant models. 4th International Workshop on Functional-Structural Plant Models, Montpellier, France, 7-11 June, 2004. Montpellier, France: UMR AMAP.

Boundary treatment for virtual leaf surfaces

Loch, B. I., Belward, J. A. and Hanan, J. S. (2003). Boundary treatment for virtual leaf surfaces. 1st International Conference on Computer Graphics & Interacting Techniques in Australasia & South East Asia, Melbourne, 11-14 February 2003. New York, USA: Association for Computing Machinery Inc.. doi: 10.1145/604471.604525

Discovery of Emergent Natural Laws by Hierarchical Multi-Agent Systems

Stolk, Henk, Gates, Kevin and Hanan, Jim (2003). Discovery of Emergent Natural Laws by Hierarchical Multi-Agent Systems. IEEE/WIC International Conference on Intelligent Agent Technology, Halifax, Canada, October, 2003. Los Alamitos, CA: IEEE Computer Society. doi: 10.1109/IAT.2003.1241051

Modelling the Architecture of Plants: Some Concepts and Potential Applications

Hanan, J., Birch, C. J. and Vos, J. (2003). Modelling the Architecture of Plants: Some Concepts and Potential Applications. Versatile Maize -- Golden Opportunities : 5th Australian Maize Conference Proceedings, City Golf Club, Toowoomba, 18-20 February, 2003.

Modelling the architecture of plants - some concepts and potential applications

Hanan, J. S., Birch, C. J. and Voss, J. (2003). Modelling the architecture of plants - some concepts and potential applications. Versatile Maize, Golden Opportunities - 5th Aust. Maize Conf., Toowoomba, Australia, 18-20 February, 2003. Darlington Point, Australia: Maize Association of Australia.

New interactive software for weed science research and education

Adkins, S. W., Navie, S., Norton, G. and Hanan, J. S. (2003). New interactive software for weed science research and education. Weed Science, Agricultural Sustainability and GMOs, Manila, 17-21 March, 2003. Manila, Philippines: Weed Science Society of Philippines.

Plant-level responses of cotton and bladder ketmia

Gaur, S. K., Hanan, J. S. and Adkins, S. W. (2003). Plant-level responses of cotton and bladder ketmia. Weed Science, Agricultural Sustainability and GMOs, Manilia, 17-21 March, 2003. Manila, Philippines: Weed Science Society of Philippines.

Simulating and visualizing spray deposition on plant canopies

Hanan, J. S., Renton, M. and Yorston, E. M. (2003). Simulating and visualizing spray deposition on plant canopies. 1st International Conference on Computer Graphics & Interacting Techniques in Australasia & South East Asia, Melbourne, 11-14 February 2003. New York, USA: Association for Computing Machinery Inc.. doi: 10.1145/604471.604524

The inside story: Including physiology in structural plant models

Renton, M., Hanan, J. S. and Kaitaniemi, P. (2003). The inside story: Including physiology in structural plant models. 1st International Conference on Computer Graphics & Interacting Techniques in Australasia & South East Asia, Melbourne, 11-14 February 2003. New York, USA: Association for Computing Machinery Inc.. doi: 10.1145/604471.604491

Towards More Relevant Evolutionary Models: Integrating an Artificial Genome With a Developmental Phenotype

Watson, James, Wiles, Janet and Hanan, Jim (2003). Towards More Relevant Evolutionary Models: Integrating an Artificial Genome With a Developmental Phenotype. The 1st Australian Conference on Artificial Life (ACAL 2003), Canberra, Australia, 6-7 December, 2003. Canberra, Australia: The University of New South Wales.

Using computational plant science tools to investigate morphological aspects of compensatory growth

Thornby, D. F., Renton, M. and Hanan, J. S. (2003). Using computational plant science tools to investigate morphological aspects of compensatory growth. ICCS 2993, Melbourne, Australia & Petersburg, Russia, 7-9 June & 21-25 July 2003. Berlin Heidelberg: Springer-Verlag. doi: 10.1007/3-540-44864-0_73

Architectural responses of intra- and inter-species plant-plant interactions

Kumar, S. K., Hanan, J. S. and Adkins, S. W. (2002). Architectural responses of intra- and inter-species plant-plant interactions. 13th Australian Weeds Conference, Perth, W.A./Sheraton Perth Hotel, 8-13 September, 2002. Melbourne: Shannon Books.

Derivation of L-system models from measurements of biological branching structures using genetic algorithms

Runqiang, B., Chen, Y., Burrage, K., Hanan, J. S., Room, P. M. and Belward, J. A. (2002). Derivation of L-system models from measurements of biological branching structures using genetic algorithms. 15th International Conference on Industrial & Engineering Applications of Artificial Intelligence & Expert Systems, IEA/AIE 2002, Cairns, Australia, 17-20 June, 2002. Heidelberg: Springer Verlag. doi: 10.1007/3-540-48035-8_50

Thinking laterally about long-distance signaling

Beveridge, C. A., Foo, E., Morris, S., Williams, J. S., Yorston, E. M., Hanan, J. S. and Rameau, C. (2002). Thinking laterally about long-distance signaling. ComBio 2002 Conference, Sydney Convention Centre, 29 September-3 October, 2002. Sydney, Australia: Australian Society for Biochemistry & Molecular Biology Inc..

Integrative plant physiology: Dealing with plant development as the outcome of an integrated, coordinated and dynamic regulatory network

Beveridge, C. A., Hanan, J. S. and Burrage, K. (2001). Integrative plant physiology: Dealing with plant development as the outcome of an integrated, coordinated and dynamic regulatory network. Molecular Genetics of Model Legumes - Impact for Legume Biolo, Golm, Germany, 15th - 19th of September, 2001. Golm, Germany: ICLGG.

3D dynamics, scientific visualisation, VR and PPM in entomology

Room, P, Hanan, J and Clarke, T (1998). 3D dynamics, scientific visualisation, VR and PPM in entomology. 6th Australasian Applied Entomological Research Conference, Brisbane Australia, Sep 29-Oct 02, 1998. ST LUCIA: UNIV QUEENSLAND, DEPT HOSP TOURISM PROP MANAGEMENT LAWES.

Virtual Cotton: A New Tool for Research, Management and Training

Room, P.M. and Hanan, J.S. (1995). Virtual Cotton: A New Tool for Research, Management and Training . World Cotton Research Conference I, Brisbane, Australia, 14-17 February 1994. Brisbane, Australia: CSIRO.

Concept and design of a virtual laboratory

Mercer, Lynn, Prusinkiewicz, Przemyslaw and Hanan, James (1990). Concept and design of a virtual laboratory. Publ by Canadian Information Processing Soc.

Development models of herbaceous plants for computer imagery purposes

Prusinkiewicz, Przemyslaw, Lindenmayer, Aristid and Hanan, James (1988). Development models of herbaceous plants for computer imagery purposes. 15th International Conference on Computer Graphics and Interactive Techniques, SIGGRAPH 1988, Atlanta, GA, August 1, 1988-August 5, 1988. Association for Computing Machinery, Inc.

Proceedings of the 5th International Workshop on Functional Structural Plant Models: Abstracts of papers and posters

Przemyslaw Prusinkiewicz, Jim Hanan and Brendan Lane eds. (2007). Proceedings of the 5th International Workshop on Functional Structural Plant Models: Abstracts of papers and posters. 5th International Workshop on Functional-Structural Plant Models, Napier, New Zealand, 4-9 November 2007. HortResearch.

Proceedings of the 4th International Workshop on Functional-Structural Plant Models

Christophe Godin, Jim Hanan, Winfried Kurth, Andre Lacointe, Akio Takenaka, Przemyslaw Prusinkiewicz, Ted DeJong, Christine Beveridge and Bruno Andrieu eds. (2004). Proceedings of the 4th International Workshop on Functional-Structural Plant Models. 4th International Workshop on Functional-Structural Plant Models, Montpellier, France, 7-11 June, 2004. Montpellier, France: UMR AMAP.

Parametric L-systems and their application to the modelling and visualization of plants

Hanan, James (1992). Parametric L-systems and their application to the modelling and visualization of plants. PhD Thesis, Department of Computer Science, University of Regina, Saskatchewan.

Plantworks: A software system for realistic plant modelling

Hanan, James S. (1988). Plantworks: A software system for realistic plant modelling. M.Sc Thesis, Faculty of Science, University of Regina, Saskatchewan.