Dr David Kainer

Senior Research Fellow

School of Agriculture and Food Sustainability
Faculty of Science

Overview

Research Interests

  • network biology
    construction and machine-learning analysis of multi-omic biological networks
  • Gene Regulatory Networks
  • Network perturbation and phenotype prediction

Qualifications

  • Member, Australian Bioinformatics and Computational Biology Society, Australian Bioinformatics and Computational Biology Society
  • Doctoral (Research) of Population, Ecological and Evolutionary Genetics, Australian National University

Publications

  • Dhaubhadel, Sayera, Ganguly, Kumkum, Ribeiro, Ruy M., Cohn, Judith D., Hyman, James M., Hengartner, Nicolas W., Kolade, Beauty, Singley, Anna, Bhattacharya, Tanmoy, Finley, Patrick, Levin, Drew, Thelen, Haedi, Cho, Kelly, Costa, Lauren, Ho, Yuk-Lam, Justice, Amy C., Pestian, John, Santel, Daniel, Zamora-Resendiz, Rafael, Crivelli, Silvia, Tamang, Suzanne, Martins, Susana, Trafton, Jodie, Oslin, David W., Beckham, Jean C., Kimbrel, Nathan A., Agarwal, Khushbu, Ashley-Koch, Allison E., Aslan, Mihaela ... McMahon, Benjamin H. (2024). High dimensional predictions of suicide risk in 4.2 million US Veterans using ensemble transfer learning. Scientific Reports, 14 (1) 1793. doi: 10.1038/s41598-024-51762-9

  • Sullivan, Kyle, Miller, J. Izaak, Kainer, David, Lane, Matthew, Cashman, Mikaela, Garvin, Michael R., Townsend, Alice, Kruse, Peter, Quach, Bryan C., Willis, Caryn, Xu, Ke, Aouzierat, Bradley E., Johnson, Eric O., Hancock, Dana B. and Jacobson, Daniel (2023). 78. NETWORK BIOLOGY ALGORITHMS IDENTIFY BIOLOGICAL PATHWAYS UNDERLYING CIGARETTE SMOKING BEHAVIORS. European Neuropsychopharmacology, 75, S98-S99. doi: 10.1016/j.euroneuro.2023.08.183

  • Gopalakrishnan Meena, Muralikrishnan, Lane, Matthew J, Tannous, Joanna, Carrell, Alyssa A, Abraham, Paul E, Giannone, Richard J, Ané, Jean-Michel, Keller, Nancy P, Labbé, Jesse L, Kainer, David, Jacobson, Daniel A and Rush, Tomás A (2023). A glimpse into the fungal metabolomic abyss: Novel network analysis reveals relationships between exogenous compounds and their outputs. PNAS Nexus, 2 (10) ARTN pgad322, pgad322. doi: 10.1093/pnasnexus/pgad322

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Publications

Journal Article

Conference Publication

Other Outputs