The University of Queensland

Design and analysis of multi-year field trials for annual crops

Arief, Vivi N., DeLacy, Ian H. and Basford, Kaye E. (2020). Design and analysis of multi-year field trials for annual crops. Quantitative genetics, genomics and plant breeding. (pp. 178-193) Wallingford, United Kingdom: CABI. doi: 10.1079/9781789240214.0178

Simulations of multiple breeding strategy scenarios in common bean for assessing genomic selection accuracy and model updating

Chiaravallotti, Isabella, Lin, Jennifer, Arief, Vivi, Jahufer, Zulfi, Osorno, Juan M., McClean, Phil, Jarquin, Diego and Hoyos-Villegas, Valerio (2024). Simulations of multiple breeding strategy scenarios in common bean for assessing genomic selection accuracy and model updating. Plant Genome. doi: 10.1002/tpg2.20388

Simulations of rate of genetic gain in dry bean breeding programs

Lin, Jennifer, Arief, Vivi, Jahufer, Zulfi, Osorno, Juan, McClean, Phil, Jarquin, Diego and Hoyos-Villegas, Valerio (2023). Simulations of rate of genetic gain in dry bean breeding programs. Theoretical and Applied Genetics, 136 (1) 14, 1-22. doi: 10.1007/s00122-023-04244-x

The application of Fourier Transform Infra-Red spectrometry to assess the impact of changes in photosynthetic photon flux on cell wall components and turf quality of different cultivars of Cynodon grasses

Brown, Christopher W., Jie, Marcus Wee Qi, Pearce, William, Arief, Vivi, Dayananda, Buddhi, Lambrides, Christopher J. and Grof, Christopher P. L. (2023). The application of Fourier Transform Infra-Red spectrometry to assess the impact of changes in photosynthetic photon flux on cell wall components and turf quality of different cultivars of Cynodon grasses. Grass Research, 3 (9) 9. doi: 10.48130/gr-2023-0009

Visualising the pattern of long‐term genotype performance by leveraging a genomic prediction model

Arief, Vivi N., DeLacy, Ian H., Payne, Thomas and Basford, Kaye E. (2022). Visualising the pattern of long‐term genotype performance by leveraging a genomic prediction model. Australian and New Zealand Journal of Statistics, 64 (2), 297-312. doi: 10.1111/anzs.12362

Deterministic and stochastic modelling of impacts from genomic selection and phenomics on genetic gain for perennial ryegrass dry matter yield

Jahufer, M. Z. Z., Arojju, Sai Krishna, Faville, Marty J., Ghamkhar, Kioumars, Arief, Vivi, Yang, Wen-Hsi, Luo, Dongwen, Sun, Mingzhu, DeLacy, Ian H., Griffiths, Andrew G., Eady, Colin, Clayton, Will, Stewart, Alan V., George, Richard M., Hoyos-Villegas, Valerio, Basford, Kaye E. and Barrett, Brent (2021). Deterministic and stochastic modelling of impacts from genomic selection and phenomics on genetic gain for perennial ryegrass dry matter yield. Scientific Reports, 11 (1) 13265, 1-18. doi: 10.1038/s41598-021-92537-w

Maternal and infant predictors of infant mortality in California, 2007–2015

Ratnasiri, Anura W. G., Lakshminrusimha, Satyan, Dieckmann, Ronald A., Lee, Henry C., Gould, Jeffrey B., Parry, Steven S., Arief, Vivi N., DeLacy, Ian H., DiLibero, Ralph J. and Basford, Kaye E. (2020). Maternal and infant predictors of infant mortality in California, 2007–2015. PloS One, 15 (8) e0236877, e0236877. doi: 10.1371/journal.pone.0236877

Smoking during pregnancy and adverse birth and maternal outcomes in California, 2007 to 2016

Ratnasiri, Anura W. G., Gordon, Lauren, Dieckmann, Ronald A., Lee, Henry C., Parry, Steven S., Arief, Vivi N., DeLacy, Ian H., Lakshminrusimha, Satyan, DiLibero, Ralph J. and Basford, Kaye E. (2020). Smoking during pregnancy and adverse birth and maternal outcomes in California, 2007 to 2016. American Journal of Perinatology, 37 (13), 1364-1376. doi: 10.1055/s-0039-1693689

Modeling and simulation of recurrent phenotypic and genomic selections in plant breeding under the presence of epistasis

Ali, Mohsin, Zhang, Luyan, DeLacy, Ian, Arief, Vivi, Dieters, Mark, Pfeiffer, Wolfgang H., Wang, Jiankang and Li, Huihui (2020). Modeling and simulation of recurrent phenotypic and genomic selections in plant breeding under the presence of epistasis. Crop Journal, 8 (5), 866-877. doi: 10.1016/j.cj.2020.04.002

Trends in maternal prepregnancy body mass index (BMI) and its association with birth and maternal outcomes in California, 2007–2016: a retrospective cohort study

Ratnasiri, Anura W. G., Lee, Henry C., Lakshminrusimha, Satyan, Parry, Steven S., Arief, Vivi N., DeLacy, Ian H., Yang, Jo-Shing, DiLibero, Ralph J., Logan, Julia and Basford, Kaye E. (2019). Trends in maternal prepregnancy body mass index (BMI) and its association with birth and maternal outcomes in California, 2007–2016: a retrospective cohort study. PLoS ONE, 14 (9) e0222458, e0222458. doi: 10.1371/journal.pone.0222458

Phenotypic diversity and marker-trait association studies under heat stress in tomato (Solanum lycopersicum L.)

Alsamir, Muhammed, Ahmad, Nabil, Arief, Vivi, Mahmood, Tariq and Trethowan, Richard (2019). Phenotypic diversity and marker-trait association studies under heat stress in tomato (Solanum lycopersicum L.). Australian Journal of Crop Science, 13 (4), 578-587. doi: 10.21475/ajcs.19.13.04.p1581

Utilization of multiyear plant breeding data to better predict genotype performance

Arief, Vivi N., Desmae, Haile, Hardner, Craig, DeLacy, Ian H., Gilmour, Arthur, Bull, Jason K. and Basford, Kaye E. (2019). Utilization of multiyear plant breeding data to better predict genotype performance. Crop Science, 59 (2), 480-490. doi: 10.2135/cropsci2018.03.0182

QuLinePlus: extending plant breeding strategy and genetic model simulation to cross-pollinated populations—case studies in forage breeding

Hoyos-Villegas, Valerio, Arief, Vivi N, Yang, Wen-Hsi, Sun, Mingzhu, DeLacy, Ian H, Barrett, Brent A, Jahufer, Zulfi and Basford, Kaye E (2019). QuLinePlus: extending plant breeding strategy and genetic model simulation to cross-pollinated populations—case studies in forage breeding. Heredity, 122 (5), 684-695. doi: 10.1038/s41437-018-0156-0

Temporal trends, patterns, and predictors of preterm birth in California from 2007 to 2016, based on the obstetric estimate of gestational age

Ratnasiri, Anura W.G., Parry, Steven S., Arief, Vivi N., DeLacy, Ian H., Lakshminrusimha, Satyan, Halliday, Laura A., DiLibero, Ralph J. and Basford, Kaye E. (2018). Temporal trends, patterns, and predictors of preterm birth in California from 2007 to 2016, based on the obstetric estimate of gestational age. Maternal Health, Neonatology and Perinatology, 4 (1) 25, 25. doi: 10.1186/s40748-018-0094-0

Recent trends, risk factors, and disparities in low birth weight in California, 2005-2014: a retrospective study

Ratnasiri, Anura W. G., Parry, Steven S., Arief, Vivi N., DeLacy, Ian H., Halliday, Laura A., DiLibero, Ralph J. and Basford, Kaye E. (2018). Recent trends, risk factors, and disparities in low birth weight in California, 2005-2014: a retrospective study. Maternal Health, Neonatology and Perinatology, 4 (1) 15, 15. doi: 10.1186/s40748-018-0084-2

Application of a dendrogram seriation algorithm to extract pattern from plant breeding data

Arief, Vivi Noviati, DeLacy, I. H., Basford, K. E. and Dieters, M. J. (2017). Application of a dendrogram seriation algorithm to extract pattern from plant breeding data. Euphytica, 213 (4) 85. doi: 10.1007/s10681-017-1870-z

A genomic selection index applied to simulated and real data

Ceron-Rojas, J. Jesus, Crossa, Jose, Arief, Vivi N., Basford, Kaye, Rutkoski, Jessica, Jarquin, Diego, Alvarado, Gregorio, Beyene, Yoseph, Semagn, Kassa and DeLacy, Ian (2015). A genomic selection index applied to simulated and real data. G3: Genes, Genomes, Genetics, 5 (10), 2155-2164. doi: 10.1534/g3.115.019869

Evaluating testing strategies for plant breeding field trials: redesigning a CIMMYT international wheat nursery

Arief, Vivi N., DeLacy, Ian H., Crossa, Jose, Payne, Thomas, Singh, Ravi, Braun, Hans-J., Tian, Ting, Basford, Kaye E. and Dieters, Mark J. (2015). Evaluating testing strategies for plant breeding field trials: redesigning a CIMMYT international wheat nursery. Crop Science, 55 (1), 164-177. doi: 10.2135/cropsci2014.06.0415

Exploring wheat landraces for rust resistance using a single marker scan

Bansal, Urmil K., Arief, Vivi N., DeLacy, Ian H. and Bariana, Harbans S. (2013). Exploring wheat landraces for rust resistance using a single marker scan. Euphytica, 194 (2), 219-233. doi: 10.1007/s10681-013-0940-0

Using molecular marker order to compare genetic structure in plant populations undergoing selection

Arief, Vivi N., DeLacy, Ian H., Wenzl, Peter, Dreisigacker, Susanne, Crossa, Jose, Dieters, Mark J. and Basford, Kaye E. (2013). Using molecular marker order to compare genetic structure in plant populations undergoing selection. Journal of Environmental Statistics, 4 (4).

Grain dormancy QTL identified in a doubled haploid barley population derived from two non-dormant parents

Hickey, L.T., Lawson, W., Arief, V.N., Fox, G., Franckowiak, J. and Dieters, M.J. (2012). Grain dormancy QTL identified in a doubled haploid barley population derived from two non-dormant parents. Euphytica, 188 (1), 133-122. doi: 10.1007/s10681-011-0577-9

Mapping quantitative trait loci for partial resistance to powdery mildew in an Australian barley population

Hickey, Lee T., Lawson, Wendy, Platz, Greg J., Fowler, Ryan A., Arief, Vivi, Dieters, Mark, German, Silvia, Fletcher, Susan, Park, Robert F., Singh, Davinder, Pereyra, Silvia and Franckowiak, Jerome (2012). Mapping quantitative trait loci for partial resistance to powdery mildew in an Australian barley population. Crop Science, 52 (3), 1021-1032. doi: 10.2135/cropsci2011.10.0535

Factors controlling self-fertility in sunflower: The role of GCA/SCA effects, S alleles, and floret characteristics

Sun, Yue, Godwin, Ian D., Arief, Vivi N., Delacy, Ian H., Jackway, Paul T. and Lambrides, Christopher J. (2012). Factors controlling self-fertility in sunflower: The role of GCA/SCA effects, S alleles, and floret characteristics. Crop Science, 52 (1), 128-135. doi: 10.2135/cropsci2011.04.0188

Genetic structures of the CIMMYT international yield trial targeted to irrigation environments

Dreisigacker, Susanne, Shewayrga, Hailemichael, Crossa, Jose, Arief, Vivi N, DeLacy, Ian H., Singh, Ravi P., Dieters, Mark J. and Braun, Hans-Joachim (2012). Genetic structures of the CIMMYT international yield trial targeted to irrigation environments. Molecular Breeding, 29 (2), 529-541. doi: 10.1007/s11032-011-9569-7

Mapping Rph20: A gene conferring adult plant resistance to Puccinia hordei in barley

Hickey, L. T., Lawson, W., Platz, G. J., Dieters, M., Arief, V. N., Germán, S., Fletcher, S., Park, R. F., Singh, D., Pereyra, S. and Franckowiak, J. (2011). Mapping Rph20: A gene conferring adult plant resistance to Puccinia hordei in barley. Theoretical and Applied Genetics, 123 (1), 55-68. doi: 10.1007/s00122-011-1566-z

Prediction of genetic values of quantitative traits in plant breeding using pedigree and molecular markers

Crossa, J, de los Campos, G, Perez, P, Gianola, D, Burgueno, J, Araus, JL, Makumbi, D, Singh, RP, Dreisigacker, S, Yan, JB, Arief, V, Banziger, M and Braun, HJ (2010). Prediction of genetic values of quantitative traits in plant breeding using pedigree and molecular markers. Genetics, 186 (2), 713-724. doi: 10.1534/genetics.110.118521

Genetic gain in yield and protein over two cycles of a wheat recurrent selection program

Niu, Na, Arief, Vivi N., DeLacy, Ian H., Lush, Douglas, Sheppard, John, Zhang, Gaisheng and Dieters, Mark J. (2010). Genetic gain in yield and protein over two cycles of a wheat recurrent selection program. Breeding Science, 60 (3), 181-186. doi: 10.1270/jsbbs.60.181

Construction and three-way ordination of the Wheat Phenome Atlas

Arief, V. N., Kroonenberg, P. M., DeLacy, I. H., Dieters, M. J., Crossa, J., Dreisigacker, S., Braun, H. -J. and Basford, K. E. (2010). Construction and three-way ordination of the Wheat Phenome Atlas. Journal of Applied Probability and Statistics, 5 (1), 95-118.

Exploratory data analysis of TCGA skin cutaneous melanoma RNA-seq data

Zhang, Min, Arief, Vivi, McLachlan, Geoffrey, Nguyen, Quan and Basford, Kaye (2022). Exploratory data analysis of TCGA skin cutaneous melanoma RNA-seq data. Australasian Applied Statistics Conference (AASC), Inverloch, VIC Australia, 28 November - 2 December 2022.

Analysis of longitudinal, image-based canopy cover estimates as a quality indicator in wheat variety trials

Ramakers, Jip, Bustos-Korts, Daniela, Hemerik, Jesse, Boer, Martin, Grunefeld, Swaantje, Hu, Pengcheng, Arief, Vivi, van Eeuwijk, Fred and Chapman, Scott (2022). Analysis of longitudinal, image-based canopy cover estimates as a quality indicator in wheat variety trials. XVIIIth Eucarpia Biometrics in Plant Breeding Conference, Gif-sur-Yvette, France, 21-23 September 2022.

Integration of data across scales to predict genotype performance in National Variety Trials

Chapman, Scott, Noviati, Vivi, Hu, Pengcheng, McLaren, Connar, Smith, Daniel, Choudhury, Malini, Chen, Zhi, Grunfeld, Swaantje, Zheng, Bangyou, van Eeuwijk, Fred, Bustos-Korts, Daniela, Boer, Martin, Hemerik, Jesse and Ramakers, Jip (2022). Integration of data across scales to predict genotype performance in National Variety Trials. Australasian Plant Breeding Conference, Gold Coast, QLD Australia, 9-11 May 2022.

Plant breeding simulation studies in the common bean (Phaseolus vulgaris L.)

Lin, Jennifer, Hoyos-Villegas, Valerio and Arief, Vivi N. (2022). Plant breeding simulation studies in the common bean (Phaseolus vulgaris L.). Plant and Animal Genome, San Diego, CA USA, 8-12 January 2022.

Amaranthus diversity in Papua New Guinea

Waken, Philmah, Arief, Vivi and Dieters, Mark (2022). Amaranthus diversity in Papua New Guinea. TropAg Conference, Brisbane, QLD, Australia, 31 October - 2 November 2022.

Carinata (Brassica carinata) multi-purpose crop for the future: fumigation, feed, food and fuel

van Herwaarden, Anthony , Bennett, Rick , Potter, Trent , Lambrides, Christopher , Gororo, Nelson , Krakowski, Hank , Arief, Vivi , Leveque, Winslow and Salisbury, Pillip (2022). Carinata (Brassica carinata) multi-purpose crop for the future: fumigation, feed, food and fuel. Australasian Plant Breeding Conference, Gold Coast, QLD, Australia, 9-11 May 2022.

Constant water table rainproof pot system: An effective outdoor method to measure water use efficiency

Zhong, Yayue, Hunter, Malcolm, Singh, Vijaya, Dieters, Mark, Basford, Kaye, Chauhan, Yash and Arief, Vivi (2022). Constant water table rainproof pot system: An effective outdoor method to measure water use efficiency. TropAg Conference, Brisbane, QLD, Australia, 31 October - 2 November 2022.

Genomic Selection to improve quantitative resistance to Blackleg (Leptosphaeria maculans ) in Canola (Brassica napus )

Lambrides, Christopher , Liddle, Willow , Tabah, David , Hardner, Craig and Arief, Vivi (2022). Genomic Selection to improve quantitative resistance to Blackleg (Leptosphaeria maculans ) in Canola (Brassica napus ). Australasian Plant Breeding Conference, Gold Coast, QLD, Australia, 9-11 May 2022.

Incorporating individual with missing pedigree information in a pedigree-genomic relationship matrix

Arief, Vivi , Mellor, Vincent and Dieters, Mark (2022). Incorporating individual with missing pedigree information in a pedigree-genomic relationship matrix. Australasian Plant Breeding Conference, Gold Coast, QLD, Australia, 9-11 May 2022.

Screening of crown rot resistance in durum wheat

Zhong, Yayue , Arief, Vivi N. and Dieters, Mark (2022). Screening of crown rot resistance in durum wheat. Australasian Plant Breeding Conference, Gold Coast, QLD, Australia, 9-11 May 2022.

The pursuit of excellence; some reflections after 50+ years of plant breeding at The University of Queensland (9771)

Lambrides, Christopher , Basford, Kaye , DeLacy, Ian , Cooper, Mark , Hardner, Craig , Godwin, Ian , Dieters, Mark and Arief, Vivi (2022). The pursuit of excellence; some reflections after 50+ years of plant breeding at The University of Queensland (9771). Australasian Plant Breeding Conference, Gold Coast, QLD, Australia, 9-11 May 2022.

Identification of new single cross testers for CIMMYT heterotic group B maize germplasm adapted to mid-altitudes

Chisaka, Arisede, Arief, Vivi, Tarekegne, Amsal and Dieters, Mark (2020). Identification of new single cross testers for CIMMYT heterotic group B maize germplasm adapted to mid-altitudes. The Third International Tropical Agriculture Conference TropAg 2019 , Brisbane, QLD Australia, 11-13 November 2019. Basel, Switzerland: MDPI. doi: 10.3390/proceedings2019036218

Pedigree Data Analysis of a Wheat Population

Rouholamin, Sepideh, Arief, Vivi, Delacy, Ian and Basford, Kaye (2020). Pedigree Data Analysis of a Wheat Population. TropAg 2019, Brisbane, QLD Australia, 11-13 November 2019. Basel, Switzerland: MDPI. doi: 10.3390/proceedings2019036148

QuLinePlus: A Versatile Module of QU-GENE for Plant Breeding Simulation

Arief, Vivi N., Yang, Wen-Hsi , DeLacy, Ian H., Arojju, Sai Krishna , Jahufer, Zulfi and Basford, Kaye E. (2020). QuLinePlus: A Versatile Module of QU-GENE for Plant Breeding Simulation. Plant and Animal Genome, San Diego, CA, United States, 11-15 January 2020.

Spatial analysis for trials with limited replication

Shewayrga, H., Arief, V. N., Hardner, C. M., DeLacy, I. H. and Basford, K. E. (2016). Spatial analysis for trials with limited replication. Australasian Applied Statistical Conference, Bermagui, NSW, Australia, 28 November - 2 December 2016.

The value of long-term multi-year multi-location trial data to evaluate risk in prediction of early cultivar performance

Arief, V., DeLacy, I., Dieters, M. and Basford, K. (2016). The value of long-term multi-year multi-location trial data to evaluate risk in prediction of early cultivar performance. 5th International Conference on Quantitative Genetics, Madison, WI, United States, 12-17 June 2016.

Factor affecting the distribution of the vine species in sugarcane: results of GIS surveys in Central Queensland

Fillols, Emilie, Arief, Vivi and Staier, Tim (2015). Factor affecting the distribution of the vine species in sugarcane: results of GIS surveys in Central Queensland. 37th Conference of the Australian Society of Sugar Cane Technologists, Bundaberg, QLD, Australia, 28 - 30 April 2015.

Application of marker-trait association profiles in simulating plant breeding strategies

Arief, Vivi N., DeLacy, Ian H., Dieters, Mark J. and Basford, Kaye E. (2014). Application of marker-trait association profiles in simulating plant breeding strategies. 15th Australasian Plant Breeding Conference, St Kilda, Victoria, Australia, 26-29 October 2014.

Comparing speed breeding protocols using QU-GENE simulation

DeLacy, Ian, Hickey, Lee, Arief, Vivi and Dieters, Mark J. (2014). Comparing speed breeding protocols using QU-GENE simulation. 15th Australasian Plant Breeding Conference, St Kilda, Victoria, Australia, 26-29 October 2014.

Evaluation of two-times testing for CIMMYT's international wheat nurseries

Arief, Vivi, DeLacy, Ian, Tian, Ting, Crossa, Jose, Braun, Hans-J., Basford, Kaye and Dieters, Mark (2013). Evaluation of two-times testing for CIMMYT's international wheat nurseries. WBA Brisbane 2013: Wheat Breeding Assembly, Brisbane, QLD, Australia, 16-19 July, 2013. Brisbane, QLD, Australia:

Three interpretations of line-mean heritability calculated from plant breeding field trials

Desmae, Haile, DeLacy, Ian, Arief, Vivi and Basford, Kaye (2013). Three interpretations of line-mean heritability calculated from plant breeding field trials. WBA Brisbane 2013: Wheat Breeding Assembly, Brisbane, QLD, Australia, 16-19 July, 2013. Brisbane, QLD, Australia:

Optimised dendrogram: extracting population information using seriation to enhance hierarchical clustering

Arief, Vivi, DeLacy, Ian, Basford, Kaye and Dieters, Mark (2012). Optimised dendrogram: extracting population information using seriation to enhance hierarchical clustering. 4th International Conference on Quantitative Genetics, Edinburgh, Scotland, 17-22 June 2012.

Extending status analysis to project genotype performance into long-term environment discrimination space –an example

DeLacy, I. H., Arief, V. N., Payne, T., Braun, H.-J. and Basford, K. E. (2011). Extending status analysis to project genotype performance into long-term environment discrimination space –an example. Wheat Breeding Assembly, Perth AUSTRALIA, 24 - 26 August 2011.

Identification of grain dormancy QTL in a barley doubled haploid population derived from non-dormant parents.

Hickey, L., Lawson, W., Arief, V., Dieters, M, Fox, G. and Franckowiak, J. (2011). Identification of grain dormancy QTL in a barley doubled haploid population derived from non-dormant parents.. 12th International Symposium on Pre-harvest Sprouting, Red Deer Canada, 24-27 July.

Mapping RPH: A gene conferring adult plant resistance to leaf rust in barley

Hickey, L., Lawson, W., Platz, G., Dieters, M, Arief, V., Germán, S., Fletcher, S., Park, R., Singh, D., Pereyra, S. and Franckowiak, J. (2011). Mapping RPH: A gene conferring adult plant resistance to leaf rust in barley. Australian Barley Technical Symposium (15th, ABTS, 2011), Adelaide, Australia, 18-21 September 2011. Sydney, Australia: Australian Barley Technical Symposium.

Relationships among markers based on haplotype combinations in populations of related homozygous genotypes

Arief, V. N., DeLacy, I. H., Wenzl, P., Basford, K. E., Driesigacker, S., Crossa, J. and Dieters, M. J. (2011). Relationships among markers based on haplotype combinations in populations of related homozygous genotypes. Wheat Breeding Assembly, Perth, Australia, 24 - 26 August 2011.

Status Analysis: projecting genotype performance into long-term environment discrimination space

DeLacy, I. H., Arief, V. N. and Basford, K. E. (2011). Status Analysis: projecting genotype performance into long-term environment discrimination space. Australasian Applied Statistical Conference, Cairns, Australia, 11-15 July 2011.

The challenge of breeding for grain plumpness in malting barley

Moody, D. B., Tait, S., Steadman, J. F., Panozzo, J. F., Walker, C., Hayden, M. J., Forrest, K L., Arief, V. N., Dieters, M.J. and Delacy, I.H. (2011). The challenge of breeding for grain plumpness in malting barley. Proceedings of the 15th Australian Barley Technical Symposium, Adelaide, 18-21 September.

Association mapping of rust resistance in pre-green revolution wheat accessions

Bansal, Urmil K., Arief, Vivi, Miah, Hanif, DeLacy, Ian H. and Bariana, Harbans S. (2010). Association mapping of rust resistance in pre-green revolution wheat accessions. Borlaug Global Rust Initiative 2010 Technical Workshops, St. Petersburg, Russia, 30-31 May 2010.

Construction and three-way ordination of the Wheat Phenome Atlas

Arief, V. N., Kroonenberg, P. M., DeLacy, I. H., Dieters, M. J., Crossa, J. and Basford, K. E. (2010). Construction and three-way ordination of the Wheat Phenome Atlas. Tenth Islamic Countries Conference on Statistical Sciences (ICCS-X), Cairo, Egypt, 20-23 December 2010. Lahor, Pakistan: The Islamic Countries Society of Statistical Sciences (ISOSS).

The use of pedigree, molecular marker and phenotypic data to investigate population structures in 25 years of the CIMMYT global wheat breeding program

Arief, Vivi N., DeLacy, Ian H., Crossa, Jose, Dieters, Mark J. and Basford, Kaye E. (2010). The use of pedigree, molecular marker and phenotypic data to investigate population structures in 25 years of the CIMMYT global wheat breeding program. 8th International Wheat Conference, St. Petersburg, Russia, 1-4 June 2010. St. Petersburg, Russia: N.I. Vavilov Research Institute of Plant Industry (VIR).

The use of pedigree, molecular marker and phenotypic data to investigate population structures in 25 years of the CIMMYT global wheat breeding program

Arief, Vivi N., DeLacy, Ian H., Crossa, Jose, Dieters, Mark J. and Basford, Kaye E. (2010). The use of pedigree, molecular marker and phenotypic data to investigate population structures in 25 years of the CIMMYT global wheat breeding program. Eighth International Wheat Conference, St Petersburg, Russia, 1 - 4 June 2010. St. Petersburg, Russia: Vavilov Research Institute of Plant Industry.

Three-way ordination of rust GWAS using 25 years of one of CIMMYT global wheat breeding programs

Arief, Vivi N., Kroonenberg, Pieter M., DeLacy, Ian H., Dieters, Mark J., Crossa, Jose, Dreisigacker, Susanne, Braun, Hans-J. and Basford, Kaye E. (2010). Three-way ordination of rust GWAS using 25 years of one of CIMMYT global wheat breeding programs. Borlaug Global Rust Initiative 2010 Technical Workshops, St. Petersburg, Russia, 30-31 May 2010.

An application of wheat phenome atlas using three-way principal component analysis

Arief, Vivi N., Kroonenberg, Pieter M., DeLacy, Ian H., Dieters, Mark J., Crossa, Jose and Basford, Kaye E. (2009). An application of wheat phenome atlas using three-way principal component analysis. OECD Genome Association Oz09, Perth, Australia, 9-12 November 2009.

Characterization of commercial cultivars and naturalized genotypes of Stenotaphrum secundatum (Walter) Kuntze in Australia

Loch, Donald S., Roche, Matthew B., Sun-Yue, Jenny, Arief, Vivi N., Delacy, Ian H. and Lambrides, Christopher J. (2009). Characterization of commercial cultivars and naturalized genotypes of Stenotaphrum secundatum (Walter) Kuntze in Australia. 11th ITRC: 2009 International Turfgrass Research Conference, Santiago, Chile, 26-31 July 2009. Overland Park, KS, U.S.A.: Intertec Publishing.

Genetic disequilibrium mapping using high-throughput data from a plant breeding program

V.N. Arief, I.H. Delacy, P. Wenzl and M.J. Dieters (2009). Genetic disequilibrium mapping using high-throughput data from a plant breeding program. 14th Australasian Plant Breeding Conference and 11th SABRAO, Cairns, Australia, 14-18 August 2009. Bangkok, Thailand: Society for the Advancement of Breeding Researches in Asia and Oceania.

Genetic gain in yield and protein over two cycles of recurrent selection program

Niu, N., Arief, V. N., Delacy, I. H., Lush, D., Dieters, M. J. and Zhang, G. S. (2009). Genetic gain in yield and protein over two cycles of recurrent selection program. 14th Australasian Plant Breeding and 11th SABRAO Conference, Cairns, Australia, 10–14 August 2009. Bangkok, Thailand: Society for the Advancement of Breeding Researches in Asia and Oceania.

Ordination of marker-trait association profiles from long-term international wheat trials

Arief, V. N., Delacy, I. H., Crossa, J., Kroonenberg, P. M., Dieters, M. J. and Basford, K. E. (2009). Ordination of marker-trait association profiles from long-term international wheat trials. Biometrics 2009: Biometrics on the Lake. The International Biometric Society Australasian Region Conference, Taupo, New Zealand, 29 November-3 December 2009. International Biometric Society Australasian Region (IBS AR).

Pattern analysis of marker-trait association profiles derived from 25 years of international wheat performance trials

Arief, V. N., Delacy, I. H., Dieters, M. J., Crossa, J., Dreisigacker, S. and Basford, K. E. (2009). Pattern analysis of marker-trait association profiles derived from 25 years of international wheat performance trials. 14th Australasian Plant Breeding Conference (APBC) and the 11th Congress of the Society for the Advancement of Breeding Research in Asia and Oceania (SABRAO). Contemporary Crop Improvement: A Tropical View, Cairns, Australia, 10-14 August 2009. Bangkok, Thailand: Society for Advancement of Breeding Research in Asia and Oceania.

A comparison of three genotype structures for 686 lines derived from pedigrees (COP), 1400 DArT markers and 420,000 data points from 25 Years of CIMMYT international bread wheat trials

DeLacy, Ian H., Arief, Vivi N., Dieters, Mark J., Crossa, Jose, Godwin, Ian, Batley, Jacqueline, Davenport, Guy, Dreisiqacker, Susane, Edwards, Dave, Huttner, Eric, Lambrides, Christopher, Manes, Yan, Payne, Thomas, Singh, Ravi P., Warburton, Marilyn, Wenzl, Peter, William, Manilal, Kilian, Andrzej, McLaren, Graham, Crouch, Jonathan and Basford, Kaye E. (2008). A comparison of three genotype structures for 686 lines derived from pedigrees (COP), 1400 DArT markers and 420,000 data points from 25 Years of CIMMYT international bread wheat trials. Plant and Animal Genome XVI Conference, San Diego, CA, U.S.A., 12-16 January 2008.

Association between phenotype and DArT markers in spring wheat using 25 years Of CIMMYT international field trial data

Arief, Vivi N., DeLacy, Ian H., Dieters, Mark J., Crossa, Jose, Godwin, Ian, Batley, Jacqueline, Davenport, Guy, Dreisiqacker, Susane, Edwards, Dave, Huttner, Eric, Lambrides, Christopher, Manes, Yan, Payne, Thomas, Singh, Ravi P., Warburton, Marilyn, Wenzl, Peter, Williams, Manila, Kilian, Andrezj, McLaren, Graham, Crouch, Jonathan and Basford, Kaye E. (2008). Association between phenotype and DArT markers in spring wheat using 25 years Of CIMMYT international field trial data. Plant & Animal Genomes XVI Conference, San Diego, USA, 12-16 January 2008.

Developing the wheat phenome atlas: Integrating 25 years of international wheat phenotypic data with genome analysis

Godwin, Ian D., DeLacy, Ian H., Arief, Vivi N., Dieters, Mark J., Lambrides, Christopher J., Basford, Kaye E., Crossa, Jose, Dreisigacker, Susanne, Kilian, Andrzej, Huttner, Eric, Crouch, Jonathan and McLaren, Graham (2008). Developing the wheat phenome atlas: Integrating 25 years of international wheat phenotypic data with genome analysis. 5th International Crop Science Conferences, Jeju, South Korea, 13-18 April, 2008.

Marker/trait associations identified in spring wheat using 25 years of CIMMYT International Trials

Arief, Vivi N., DeLacy, Ian H., Dieters, Mark J., Crossa, Jose, Godwin, Ian D., Batley, Jacqueline, Davenport, Guy, Dreisigacker, Susanne, Duvieller, Etienne, Edwards, D., Huttner, E., Lambrides, C., Manes, Y., Payne, T., Singh, R. P., Warburton, Marilyn, Wenzl, Peter, Kilian, Andrzej, McLaren, Graham, Braun, Hans-J., Crouch, Jonathan, Ortiz, Rodomiro and Basford, Kaye E. (2008). Marker/trait associations identified in spring wheat using 25 years of CIMMYT International Trials. 11th International Wheat Genetics Symposium, Brisbane, QLD Australia, 24-29 August 2008. Sydney, NSW Australia: Sydney University Press.

Patterns of linkage disequilibrium in multiple populations

Dreisigacker, S., Arief, V. N., DeLacy, I. H., Davenport, G., Manes, Y., Reynolds, M. P., Singh, R. P., Dieters, M. J. and Crossa, J. (2008). Patterns of linkage disequilibrium in multiple populations. 11th International Wheat Genetics Symposium, Brisbane, Queensland, 24-29 August, 2008. Sydney, Australia: Sydney University Press.

Towards a wheat phenome atlas and a phenome atlas toolbox: What are they? What progress?

DeLacy, Ian H., Dieters, Mark J., Crossa, Jose, Godwin, Ian D., Arief, Vivi N., Batley, Jacqueline, Davenport, Guy, Dreisigacker, Susanne, Edwards, David, Huttner, Eric, Lambrides, Christopher J., Manes, Yann, Payne, Thomas, Singh, Ravi P., Duvieller, Etienne, Warburton, Marilyn, Wenzl, Peter, Kilian, Andrzej, McLaren, Graham, Braun, Hans-J., Crouch, Jonathan, Ortiz, Rodomiro and Basford, Kaye E. (2008). Towards a wheat phenome atlas and a phenome atlas toolbox: What are they? What progress?. 11th International Wheat Genetics Symposium, Brisbane, Queensland, 24-29 August 2008. Sydney, Australia: Sydney University Press.

Comparision of cycle 0 in two recurrent selection programs in bread wheat for the northern region of Australia

Arief, V. N., Dieters, M. J, . and DeLacy, I. H. (2006). Comparision of cycle 0 in two recurrent selection programs in bread wheat for the northern region of Australia. Breeding for Success: Diversity in Action, Christchurch, New Zealand, 18-21 Apr 2006. Dunedin, New Zealand: NZ Grassland Association.

Methodology Development to Integrate Phenotypic and Genotypic Data from a Plant Breeding Program through Association Analysis with a Case Study Using Data from the CIMMYT International Spring Wheat Field Trials

Vivi Arief (2010). Methodology Development to Integrate Phenotypic and Genotypic Data from a Plant Breeding Program through Association Analysis with a Case Study Using Data from the CIMMYT International Spring Wheat Field Trials. PhD Thesis, School of Agriculture and Food Sciences, The University of Queensland.