The University of Queensland

Next generation sequencing applications in head and neck oncology

Farah, Camile S., Jessri, Maryam, Kordbacheh, Farzaneh, Bennett, Nigel C. and Dalley, Andrew (2015). Next generation sequencing applications in head and neck oncology. Next generation sequencing in cancer research, volume 2: from basepairs to bedside. (pp. 401-422) edited by Wei Wu and Hani Choudhry. New York, NY, United States: Springer. doi: 10.1007/978-3-319-15811-2_23

Evaluation of Endobronchial Ultrasound-Guided Transbronchial Needle Aspiration (EBUS-TBNA) Samples from Advanced Non-Small Cell Lung Cancer for Whole Genome, Whole Exome and Comprehensive Panel Sequencing

Fielding, David, Lakis, Vanessa, Dalley, Andrew J., Chittoory, Haarika, Newell, Felicity, Koufariotis, Lambros T., Patch, Ann-Marie, Kazakoff, Stephen, Bashirzadeh, Farzad, Son, Jung Hwa, Ryan, Kimberley, Steinfort, Daniel, Williamson, Jonathan P., Bint, Michael, Pahoff, Carl, Nguyen, Phan Tien, Twaddell, Scott, Arnold, David, Grainge, Christopher, Pattison, Andrew, Fairbairn, David, Gune, Shailendra, Christie, Jemma, Holmes, Oliver, Leonard, Conrad, Wood, Scott, Pearson, John V., Lakhani, Sunil R., Waddell, Nicola ... Nones, Katia (2024). Evaluation of Endobronchial Ultrasound-Guided Transbronchial Needle Aspiration (EBUS-TBNA) Samples from Advanced Non-Small Cell Lung Cancer for Whole Genome, Whole Exome and Comprehensive Panel Sequencing. Cancers, 16 (4), 785. doi: 10.3390/cancers16040785

Discrepancies in tumor mutation burden reporting from sequential endobronchial ultrasound transbronchial needle aspiration samples within single lymph node stations - brief report

Fielding, David, Dalley, Andrew J., Singh, Mahendra, Nandakumar, Lakshmy, Lakis, Vanessa, Chittoory, Haarika, Fairbairn, David, Patch, Ann-Marie, Kazakoff, Stephen H., Ferguson, Kaltin, Bashirzadeh, Farzad, Bint, Michael, Pahoff, Carl, Son, Jung Hwa, Ryan, Kimberley, Hodgson, Alan, Sharma, Sowmya, Pearson, John V., Waddell, Nicola, Lakhani, Sunil R., Hartel, Gunter, Simpson, Peter T. and Nones, Katia (2023). Discrepancies in tumor mutation burden reporting from sequential endobronchial ultrasound transbronchial needle aspiration samples within single lymph node stations - brief report. Frontiers in Oncology, 13 ARTN 1259882, 1-10. doi: 10.3389/fonc.2023.1259882

Whole genome sequencing in advanced lung cancer can be performed using diff-quik cytology smears derived from endobronchial ultrasound, transbronchial needle aspiration (EBUS TBNA)

Fielding, David, Dalley, Andrew J., Singh, Mahendra, Nandakumar, Lakshmy, Lakis, Vanessa, Chittoory, Haarika, Fairbairn, David, Ferguson, Kaltin, Bashirzadeh, Farzad, Bint, Michael, Pahoff, Carl, Son, Jung Hwa, Hodgson, Alan, Pearson, John V., Waddell, Nicola, Lakhani, Sunil R., Hartel, Gunter, Nones, Katia and Simpson, Peter T. (2023). Whole genome sequencing in advanced lung cancer can be performed using diff-quik cytology smears derived from endobronchial ultrasound, transbronchial needle aspiration (EBUS TBNA). Lung, 201 (4), 407-413. doi: 10.1007/s00408-023-00631-9

Evaluating Diff‐Quik cytology smears for large‐panel mutation testing in lung cancer—Predicting DNA content and success with low‐malignant‐cellularity samples

Fielding, David I., Dalley, Andrew J., Singh, Mahendra, Nandakumar, Lakshmy, Lakis, Vanessa, Chittoory, Haarika, Fairbairn, David, Patch, Ann‐Marie, Kazakoff, Stephen H., Ferguson, Kaltin, Bashirzadeh, Farzad, Bint, Michael, Pahoff, Carl, Son, Jung Hwa, Hodgson, Alan, Sharma, Sowmya, Waddell, Nicola, Lakhani, Sunil R., Hartel, Gunter, Nones, Katia and Simpson, Peter T. (2023). Evaluating Diff‐Quik cytology smears for large‐panel mutation testing in lung cancer—Predicting DNA content and success with low‐malignant‐cellularity samples. Cancer Cytopathology, 131 (6), 373-382. doi: 10.1002/cncy.22690

Convergence of biofabrication technologies and cell therapies for wound healing

Hosseini, Motaharesadat, Dalley, Andrew J. and Shafiee, Abbas (2022). Convergence of biofabrication technologies and cell therapies for wound healing. Pharmaceutics, 14 (12) 2749, 2749. doi: 10.3390/pharmaceutics14122749

Prospective optimization of endobronchial ultrasound-guided transbronchial needle aspiration lymph node assessment for lung cancer: Three needle agitations are noninferior to 10 agitations for adequate tumor cell and DNA yield

Fielding, David, Dalley, Andrew J., Singh, Mahendra, Nandakumar, Lakshmy, Nones, Katia, Lakis, Vanessa, Chittoory, Haarika, Ferguson, Kaltin, Bashirzadeh, Farzad, Bint, Michael, Pahoff, Carl, Son, Jung Hwa, Hodgson, Alan, Sharma, Sowmya, Godbolt, David, Coleman, Kylie, Whitfield, Lenore, Waddell, Nicola, Lakhani, Sunil R., Hartel, Gunter and Simpson, Peter T. (2022). Prospective optimization of endobronchial ultrasound-guided transbronchial needle aspiration lymph node assessment for lung cancer: Three needle agitations are noninferior to 10 agitations for adequate tumor cell and DNA yield. JTO Clinical and Research Reports, 3 (10) 100403, 100403. doi: 10.1016/j.jtocrr.2022.100403

Comparison of actionable events detected in cancer genomes by whole-genome sequencing, in silico whole-exome and mutation panels

Ramarao-Milne, P, Kondrashova, O, Patch, A-M, Nones, K, Koufariotis, L T, Newell, F, Addala, V, Lakis, V, Holmes, O, Leonard, C, Wood, S, Xu, Q, Mukhopadhyay, P, Naeini, M M, Steinfort, D, Williamson, J P, Bint, M, Pahoff, C, Nguyen, P T, Twaddell, S, Arnold, D, Grainge, C, Basirzadeh, F, Fielding, D, Dalley, A J, Chittoory, H, Simpson, P T, Aoude, L G, Bonazzi, V F ... Waddell, N (2022). Comparison of actionable events detected in cancer genomes by whole-genome sequencing, in silico whole-exome and mutation panels. ESMO Open, 7 (4) 100540, 1-11. doi: 10.1016/j.esmoop.2022.100540

Epigenome erosion and SOX10 drive neural crest phenotypic mimicry in triple-negative breast cancer

Saunus, Jodi M., De Luca, Xavier M., Northwood, Korinne, Raghavendra, Ashwini, Hasson, Alexander, McCart Reed, Amy E., Lim, Malcolm, Lal, Samir, Vargas, A. Cristina, Kutasovic, Jamie R., Dalley, Andrew J., Miranda, Mariska, Kalaw, Emarene, Kalita-de Croft, Priyakshi, Gresshoff, Irma, Al-Ejeh, Fares, Gee, Julia M. W., Ormandy, Chris, Khanna, Kum Kum, Beesley, Jonathan, Chenevix-Trench, Georgia, Green, Andrew R., Rakha, Emad A., Ellis, Ian O., Nicolau, Dan V., Simpson, Peter T. and Lakhani, Sunil R. (2022). Epigenome erosion and SOX10 drive neural crest phenotypic mimicry in triple-negative breast cancer. npj Breast Cancer, 8 (1) 57, 1-16. doi: 10.1038/s41523-022-00425-x

Exome sequencing of oral leukoplakia and oral squamous cell carcinoma implicates DNA damage repair gene defects in malignant transformation

Farah, Camile S., Jessri, Maryam, Bennett, Nigel C., Dalley, Andrew J., Shearston, Kate D. and Fox, Simon A. (2019). Exome sequencing of oral leukoplakia and oral squamous cell carcinoma implicates DNA damage repair gene defects in malignant transformation. Oral Oncology, 96, 42-50. doi: 10.1016/j.oraloncology.2019.07.005

LobSig is a multigene predictor of outcome in invasive lobular carcinoma

McCart Reed, Amy E., Lal, Samir, Kutasovic, Jamie R., Wockner, Leesa, Robertson, Alan, de Luca, Xavier M., Kalita-de Croft, Priyakshi, Dalley, Andrew J., Coorey, Craig P., Kuo, Luyu, Ferguson, Kaltin, Niland, Colleen, Miller, Gregory, Johnson, Julie, Reid, Lynne E., Males, Renique, Saunus, Jodi M., Chenevix-Trench, Georgia, Coin, Lachlan, Lakhani, Sunil R. and Simpson, Peter T. (2019). LobSig is a multigene predictor of outcome in invasive lobular carcinoma. npj Breast Cancer, 5 (1) 18, 18. doi: 10.1038/s41523-019-0113-y

Secreted cellular prion protein binds doxorubicin and correlates with anthracycline resistance in breast cancer

Wiegmans, Adrian P., Saunus, Jodi M., Ham, Sunyoung, Lobb, Richard J., Kutasovic, Jamie R., Dalley, Andrew J., Miranda, Mariska, Atkinson, Caroline, Foliaki, Simote T., Ferguson, Kaltin, Niland, Colleen, Johnstone, Cameron N., Lewis, Victoria, Collins, Steven, Lakhani, Sunil R., Al-Ejeh, Fares and Möller, Andreas (2019). Secreted cellular prion protein binds doxorubicin and correlates with anthracycline resistance in breast cancer. JCI Insight, 5 (6). doi: 10.1172/jci.insight.124092

Diff-Quik cytology smears from endobronchial ultrasound transbronchial needle aspiration lymph node specimens as a source of DNA for next-generation sequencing instead of cell blocks

Fielding, David, Dalley, Andrew J., Bashirzadeh, Farzad, Singh, Mahendra, Nandakumar, Lakshmy, McCart Reed, Amy E., Black, Debra, Kazakoff, Stephen, Pearson, John V., Nones, Katia, Waddell, Nicola, Lakhani, Sunil R. and Simpson, Peter T. (2019). Diff-Quik cytology smears from endobronchial ultrasound transbronchial needle aspiration lymph node specimens as a source of DNA for next-generation sequencing instead of cell blocks. Respiration, 97 (6), 1-14. doi: 10.1159/000495661

Breast cancer metastasis to gynaecological organs: a clinico‐pathological and molecular profiling study

Kutasovic, Jamie R., McCart Reed, Amy E., Males, Renique, Sim, Sarah, Saunus, Jodi M., Dalley, Andrew, McEvoy, Christopher R., Dedina, Liana, Miller, Gregory, Peyton, Stephen, Reid, Lynne, Lal, Samir, Niland, Colleen, Ferguson, Kaltin, Fellowes, Andrew P., Al-Ejeh, Fares, Lakhani, Sunil R., Cummings, Margaret C. and Simpson, Peter T. (2019). Breast cancer metastasis to gynaecological organs: a clinico‐pathological and molecular profiling study. The Journal of Pathology: Clinical Research, 5 (1), 25-39. doi: 10.1002/cjp2.118

Transcriptome changes induced in vitro by alcohol-containing mouthwashes in normal and dysplastic oral keratinocytes

Fox, Simon A., Currie, Sean S., Dalley, Andrew J. and Farah, Camile S. (2018). Transcriptome changes induced in vitro by alcohol-containing mouthwashes in normal and dysplastic oral keratinocytes. Journal of Oral Pathology and Medicine , 47 (5), 511-518. doi: 10.1111/jop.12704

Integrated miRNA-mRNA spatial signature for oral squamous cell carcinoma: a prospective profiling study of Narrow Band Imaging guided resection

Farah, Camile S., Fox, Simon A. and Dalley, Andrew J. (2018). Integrated miRNA-mRNA spatial signature for oral squamous cell carcinoma: a prospective profiling study of Narrow Band Imaging guided resection. Scientific Reports, 8 (1) 823, 1-13. doi: 10.1038/s41598-018-19341-x

Multidimensional phenotyping of breast cancer cell lines to guide preclinical research

Saunus, Jodi M., Smart, Chanel E., Kutasovic, Jamie R., Johnston, Rebecca L., Kalita-de Croft, Priyakshi, Miranda, Mariska, Rozali, Esdy N., Vargas, Ana Cristina, Reid, Lynne E., Lorsy, Eva, Cocciardi, Sibylle, Seidens, Tatjana, McCart Reed, Amy E., Dalley, Andrew J., Wockner, Leesa F., Johnson, Julie, Sarkar, Debina, Askarian-Amiri, Marjan E., Simpson, Peter T., Khanna, Kum Kum, Chenevix-Trench, Georgia, Al-Ejeh, Fares and Lakhani, Sunil R. (2017). Multidimensional phenotyping of breast cancer cell lines to guide preclinical research. Breast Cancer Research and Treatment, 167 (1), 1-13. doi: 10.1007/s10549-017-4496-x

Next-generation sequencing of endobronchial ultrasound transbronchial needle aspiration specimens in lung cancer

Fielding, David, Dalley, Andrew J., Bashirzadeh, Farzad, Singh, Mahendra, Nandakumar, Lakshmy, Reed, Amy E. McCart, Black, Debra, Kazakoff, Stephen, Nones, Katia, Pearson, John, Waddell, Nic, Lakhani, Sunil R. and Simpson, Peter T. (2017). Next-generation sequencing of endobronchial ultrasound transbronchial needle aspiration specimens in lung cancer. American Journal of Respiratory and Critical Care Medicine, 196 (3), 388-391. doi: 10.1164/rccm.201609-1935LE

Deficient double-strand break repair in oral squamous cell carcinoma cell lines

Jessri, Maryam, Dalley, Andrew J. and Farah, Camile S. (2017). Deficient double-strand break repair in oral squamous cell carcinoma cell lines. Journal of Oral Pathology & Medicine, 46 (9), 695-702. doi: 10.1111/jop.12576

LGR5 expression in oral epithelial dysplasia and oral squamous cell carcinoma

Dalley, Andrew J., Abdul Majeed, Ahmad A., Pitty, Luke P., Major, Aidan G. and Farah, Camile S. (2015). LGR5 expression in oral epithelial dysplasia and oral squamous cell carcinoma. Oral Surgery, Oral Medicine, Oral Pathology and Oral Radiology, 119 (4), 436-440.e1. doi: 10.1016/j.oooo.2014.11.014

Improved surgical margin definition by Narrow Band Imaging for resection of oral squamous cell carcinoma: a prospective gene expression profiling study

Farah, Camile S., Dalley, Andrew J., Nguyen, Phan, Batstone, Martin, Kordbacheh, Farzaneh, Perry-Keene, Joanna and Fielding, David (2015). Improved surgical margin definition by Narrow Band Imaging for resection of oral squamous cell carcinoma: a prospective gene expression profiling study. Head and Neck, 38 (6), 832-839. doi: 10.1002/hed.23989

hMSH6: a potential diagnostic marker for oral carcinoma in situ

Jessri, Maryam, Dalley, Andrew J. and Farah, Camile S. (2015). hMSH6: a potential diagnostic marker for oral carcinoma in situ. Journal of Clinical Pathology, 68 (1), 86-90. doi: 10.1136/jclinpath-2014-202411

Expression of ABCG2 and Bmi-1 in oral potentially malignant lesions and oral squamous cell carcinoma

Dalley, Andrew J., Pitty, Luke P., Major, Aidan G., AbdulMajeed, Ahmad A. and Farah, Camile S. (2014). Expression of ABCG2 and Bmi-1 in oral potentially malignant lesions and oral squamous cell carcinoma. Cancer Medicine, 3 (2), 273-283. doi: 10.1002/cam4.182

MutSα and MutLα immunoexpression analysis in diagnostic grading of oral epithelial dysplasia and squamous cell carcinoma

Jessri, M., Dalley, A. J. and Farah, C. S. (2014). MutSα and MutLα immunoexpression analysis in diagnostic grading of oral epithelial dysplasia and squamous cell carcinoma. Oral Surgery, Oral Medicine, Oral Pathology and Oral Radiology, 119 (1), 74-82. doi: 10.1016/j.oooo.2014.06.017

Putative cancer stem cell marker expression in oral epithelial dysplasia and squamous cell carcinoma

Abdulmajeed, A. A., Dalley, A. J. and Farah, C. S. (2013). Putative cancer stem cell marker expression in oral epithelial dysplasia and squamous cell carcinoma. Journal of Oral Pathology and Medicine, 42 (10), 755-760. doi: 10.1111/jop.12073

Loss of ELF3 immunoexpression is useful for detecting oral squamous cell carcinoma but not for distinguishing between grades of epithelial dysplasia

AbdulMajeed, Ahmad A., Dalley, Andrew J. and Farah, Camile S. (2013). Loss of ELF3 immunoexpression is useful for detecting oral squamous cell carcinoma but not for distinguishing between grades of epithelial dysplasia. Annals of Diagnostic Pathology, 17 (4), 331-340. doi: 10.1016/j.anndiagpath.2013.03.003

Epithelial to mesenchymal transition (EMT) biomarkers – E-cadherin, beta-catenin, APC and Vimentin – in oral squamous cell carcinogenesis and transformation

Chaw, S. Y., Abdul Majeed, A., Dalley, A. J., Chan, A., Stein, S. and Farah, C. S. (2012). Epithelial to mesenchymal transition (EMT) biomarkers – E-cadherin, beta-catenin, APC and Vimentin – in oral squamous cell carcinogenesis and transformation. Oral Oncology, 48 (10), 997-1006. doi: 10.1016/j.oraloncology.2012.05.011

Organotypic culture of normal, dysplastic and squamous cell carcinoma-derived oral cell lines reveals loss of spatial regulation of CD44 and p75NTR in malignancy

Dalley, Andrew J., AbdulMajeed, Ahmad A., Upton, Zee and Farah, Camile S. (2012). Organotypic culture of normal, dysplastic and squamous cell carcinoma-derived oral cell lines reveals loss of spatial regulation of CD44 and p75NTR in malignancy. Journal of Oral Pathology and Medicine, 42 (1), 37-46. doi: 10.1111/j.1600-0714.2012.01170.x

Fetuin-A promotes primary keratinocyte migration: Independent of epidermal growth factor receptor signalling

Wang, Xue-Qing, Hung, Betsy S, Kempf, Margit, Liu, Pei-Yun, Dalley, Andrew J, Saunders, Nicholas A. and Kimble, Roy M (2010). Fetuin-A promotes primary keratinocyte migration: Independent of epidermal growth factor receptor signalling. Experimental Dermatology, 19 (8), e289-e292. doi: 10.1111/j.1600-0625.2009.00978.x

First-dose and steady-state population pharmacokinetics and pharmacodynamics of piperacillin by continuous or intermittent dosing in critically ill patients with sepsis

Roberts, Jason A., Kirkpatrick, Carl M. J., Roberts, Michael S., Dalley, Andrew J. and Lipman, Jeffrey (2010). First-dose and steady-state population pharmacokinetics and pharmacodynamics of piperacillin by continuous or intermittent dosing in critically ill patients with sepsis. International Journal of Antimicrobial Agents, 35 (2), 156-163. doi: 10.1016/j.ijantimicag.2009.10.008

Tissue accumulation of cephalothin in burns: A comparative study by microdialysis of subcutaneous interstitial fluid cephalothin concentrations in burn patients and healthy volunteers

Dalley, A.J., Lipman, J., Deans, R., Venkatesh, B., Rudd, M., Roberts, M.S. and Cross, S.E. (2009). Tissue accumulation of cephalothin in burns: A comparative study by microdialysis of subcutaneous interstitial fluid cephalothin concentrations in burn patients and healthy volunteers. Antimicrobial Agents and Chemotherapy, 53 (1), 210-215. doi: 10.1128/AAC.00718-08

Piperacillin penetration into tissue of critically ill patients with sepsis - Bolus versus continuous administration?

Roberts, Jason A., Roberts, Michael S., Robertson, Thomas A., Dalley, Andrew J. and Lipman, Jeffrey (2009). Piperacillin penetration into tissue of critically ill patients with sepsis - Bolus versus continuous administration?. Critical Care Medicine, 37 (3), 926-933. doi: 10.1097/CCM.0b013e3181968e44

Measurement of tissue cortisol levels in patients with severe burns: a preliminary investigation

Cohen, Jeremy, Deans, Renae, Dalley, Andrew, Lipman, Jeff, Roberts, Michael S. and Venkatesh, Bala (2009). Measurement of tissue cortisol levels in patients with severe burns: a preliminary investigation. Critical Care, 13 (6), xx-xx. doi: 10.1186/cc8184

Meropenem dosing in critically ill patients with sepsis and without renal dysfunction: intermittent bolus versus continuous administration? Monte Carlo dosing simulations and subcutaneous tissue distribution

Roberts, Jason A., Kirkpatrick, Carl M. J., Roberts, Michael S., Robertson, Thomas A., Dalley, Andrew J. and Lipman, Jeffrey (2009). Meropenem dosing in critically ill patients with sepsis and without renal dysfunction: intermittent bolus versus continuous administration? Monte Carlo dosing simulations and subcutaneous tissue distribution. Journal of Antimicrobial Chemotherapy, 64 (1), 142-150. doi: 10.1093/jac/dkp139

Unbound Cephalothin Pharmacokinetics in Adult Burn Patients Are Related to the Elapsed Time after Injury

Dalley, Andrew J., Deans, Renae, Lipman, Jeffrey, Venkatesh, Bala, Rudd, Michael, Roberts, Michael S. and Cross, Sheree E. (2009). Unbound Cephalothin Pharmacokinetics in Adult Burn Patients Are Related to the Elapsed Time after Injury. Antimicrobial Agents and Chemotherapy, 53 (12), 5303-5305. doi: 10.1128/AAC.01600-08

Inadequate antimicrobial prophylaxis during surgery: a study of beta-lactam levels during burn debridement

Dalley, Andrew J., Lipman, Jeffrey, Venkatesh, Bala, Rudds, Michael, Roberts, Michael S. and Cross, Sheree E. (2007). Inadequate antimicrobial prophylaxis during surgery: a study of beta-lactam levels during burn debridement. Journal of Antimicrobial Chemotherapy, 60 (1), 166-169. doi: 10.1093/jac/dkm128

A simple in vitro model for investigating epithelial/mesenchymal interactions: keratinocyte inhibition of fibroblast proliferation and fibronectin synthesis

Harrison, D. A., Dalley, A. J. and MacNeill, S. (2005). A simple in vitro model for investigating epithelial/mesenchymal interactions: keratinocyte inhibition of fibroblast proliferation and fibronectin synthesis. Wound Repair and Regeneration, 13 (6), 543-550. doi: 10.1111/j.1524-475X.2005.00076.x

Keratinocyte-driven contraction of reconstructed human skin

Chakrabarty, K. H., Heaton, M., Dalley, A. J., Dawson, R. A., Freedlander, E., Khaw, P. T. and Mac Neil, S. (2001). Keratinocyte-driven contraction of reconstructed human skin. Wound Repair and Regeneration, 9 (2), 95-106. doi: 10.1046/j.1524-475x.2001.00095.x

The requirement for basement membrane antigens in the production of human epidermal/dermal composites in vitro

Ralston, D. R., Layton, C., Dalley, A. J., Boyce, S. G., Freedlander, E. and Mac Neil, S. (1999). The requirement for basement membrane antigens in the production of human epidermal/dermal composites in vitro. British Journal of Dermatology, 140 (4), 605-615. doi: 10.1046/j.1365-2133.1999.02758.x

Urinary and serum type II collagen: markers of renal fibrosis

Soylemezoglu, O., Wild, G., Dalley, A., MacNeil, S., Milford-Ward, A., Brown, C. and El Nahas, A. (1997). Urinary and serum type II collagen: markers of renal fibrosis. Nephrology Dialysis Transplantation, 12 (9), 1883-1889. doi: 10.1093/ndt/12.9.1883

Keratinocytes contract human dermal extracellular matrix and reduce soluble fibronectin production by fibroblasts in a skin composite model

Ralston, D. R., Layton, C., Dalley, A. J., Boyce, S. G., Freedlander, E. and Mac Neil, S. (1997). Keratinocytes contract human dermal extracellular matrix and reduce soluble fibronectin production by fibroblasts in a skin composite model. British Journal of Plastic Surgery, 50 (6), 408-415. doi: 10.1016/S0007-1226(97)90327-1

Investigation of calmodulin and basic fibroblast growth factor (bFGF) in idiopathic myelofibrosis: Evidence for a role of extracellular calmodulin in fibroblast proliferation

Dalley, A., Smith, J. M., Reilly, J. T. and Mac Neil, S. (1996). Investigation of calmodulin and basic fibroblast growth factor (bFGF) in idiopathic myelofibrosis: Evidence for a role of extracellular calmodulin in fibroblast proliferation. British Journal of Haematology, 93 (4), 856-862. doi: 10.1046/j.1365-2141.1996.d01-1739.x

Diff-Quik smears from EBUS TBNA procedures: Evaluating measures of tumour cellularity and feasibility of whole genome sequencing (WGS)

Fielding, David, Dalley, Andrew, Singh, Mahendra, Nandakumar, Lakshmy, Lakis, Vanessa, Chittoory, Haarika, Bashirzadeh, Farzad, Bint, Michael, Pahoff, Carl, Son, Jung, Hodgson, Alan, Sharma, Sowmya, Godbolt, David, Coleman, Kylie, Whitfield, Lenore, Waddell, Nicola, Lakhani, Sunil, Nones, Katia, Hartel, Gunter and Simpson, Peter (2023). Diff-Quik smears from EBUS TBNA procedures: Evaluating measures of tumour cellularity and feasibility of whole genome sequencing (WGS). HOBOKEN: WILEY.

Abstract P1-19-05: establishment of a human neural progenitor cell microenvironment model to investigate signalling events in triple negative breast cancer brain metastases in a high-throughput setting

Chalmers, S.B., Dalley, A.J., Kalita-de Croft, P., Saunus, J., Bassett, J.J., Sadras, F., Roberts-Thomson, S.J. and Monteith, G.R. (2019). Abstract P1-19-05: establishment of a human neural progenitor cell microenvironment model to investigate signalling events in triple negative breast cancer brain metastases in a high-throughput setting. 2018 San Antonio Breast Cancer Symposium, San Antonio, TX, United States, 4-8 December 2018. Philadelphia, PA, United States: American Association for Cancer Research (AACR). doi: 10.1158/1538-7445.sabcs18-p1-19-05

LobSig, a prognostic signature for Invasive Lobular Carcinoma

McCart Reed, Amy E., Lal, Samir, Kutasovic, Jamie R., Wockner, Leesa, Robertson, Alan, de Croft, Priyakshi Kalıta, Dalley, Andrew, Coorey, Craig P., Kuo, Luyu, Ferguson, Kaltin, Niland, Colleen, Miller, Gregory, Johnson, Julie, Reid, Lynne E., Males, Renique, Saunus, Jodi M., Chenevix-Trench, Georgia, Coin, Lachlan, Lakhani, Sunil R. and Simpson, Peter T. (2019). LobSig, a prognostic signature for Invasive Lobular Carcinoma. 7th International PacRim Breast and Prostate Cancer Meeting, Barossa Novotel, South Australia, Australia, 17-20 March 2019.

Diffquik Stained Cytology Smears Provide Improved Malignant Cell Dna Yields From Lymph Nodes At Endobronchial Ultrasound Transbronchial Needle Aspiration (Ebus-Tbna)

Fielding, D., Dalley, A., Bashirzadeh, F., Singh, M., Nandakumar, L., Reed, McCart A., Black, D., Waddell, N., Kazakoff, Stephen, Nones, Katia, Pearson, John, Lakhani, S. and Simpson, P. (2017). Diffquik Stained Cytology Smears Provide Improved Malignant Cell Dna Yields From Lymph Nodes At Endobronchial Ultrasound Transbronchial Needle Aspiration (Ebus-Tbna). ANZSRS/TSANZ Annual Scientific Meeting , Canberra, Australia, 24-28 March 2017. Richmond, VIC, Australia: Wiley-Blackwell.

Next Generation Sequencing On Endobronchial Ultrasound Transbronchial Needle Aspirate Lymph Node Specimens in Lung Cancer Shows a High Incidence of Mutations and Consistency with Single Gene Testing

Fielding, D., Bashirzadeh, F., Singh, M., Nandakumar, L., Reed, Mccart A., Black, D., Dalley, A., Pearson, J., Nones, K., Waddell, N., Simpson, P. and Lakhani, S. (2016). Next Generation Sequencing On Endobronchial Ultrasound Transbronchial Needle Aspirate Lymph Node Specimens in Lung Cancer Shows a High Incidence of Mutations and Consistency with Single Gene Testing. Thoracic Society of Australia & New Zealand and the Australian & New Zealand Society of Respiratory Science, Annual Scientific Meeting, Perth, WA Australia, 1–6 April 2016. Wiley. doi: 10.1111/resp.12754_12

Multi-marker discrimination of dysplasia grades in potentially malignant oral disorders

Farah, Camile S., Abdul Majeed, Ahmad, Jessri, Maryam, Pitty, Luke, Major, Aidan and Dalley, Andrew (2013). Multi-marker discrimination of dysplasia grades in potentially malignant oral disorders. 4th World Congress of the International Academy Of Oral Oncology (IAOO), Rhodes, Greece, 15-18 May 2013. Oxford, United Kingdom: Elsevier. doi: 10.1016/j.oraloncology.2013.03.239

DNA mismatch repair: a diagnostic panel for oral lesion

Jessri, M., Dalley, A. J. I. and Farah, C. S. (2012). DNA mismatch repair: a diagnostic panel for oral lesion. 11th Biennial Congress of the European Association of Oral Medicine, Athens, Greece, 13-15 September 2012. Malden, MA, United States: Wiley-Blackwell. doi: 10.1111/j.1601-0825.2012.12005_2.x

The effect of choice of resuscitation fluid on interstitial tissue antibiotic distribution in acute thermal injury in rats

Cross, Sheree, Dalley, Andrew, Lipman, Jeffery, Ranasinghe, Kanchanamala, Roberts, Michael, Robertson, Thomas and Venkatesh, Bala (2008). The effect of choice of resuscitation fluid on interstitial tissue antibiotic distribution in acute thermal injury in rats. 14th Congress of the International Society for Burn Injuries, Montreal, Canada, 7-11 September 2008.

The effect of thermal injury on interstitial tissue antibiotic distribution and the choice of resuscitation fluid

Cross, Sheree, Dalley, Andrew, Kanchanamala, Ranasinghe, Lipman, Jeffery, Roberts, Michael, Robertson, Thomas and Venkatesh, Bala (2008). The effect of thermal injury on interstitial tissue antibiotic distribution and the choice of resuscitation fluid. Australian Health and Medical Research Congress (AHMRC) 2008, Brisbane, Australia, 16-21 November 2008.

Investigation of calmodulin and basic fibroblast growth factor (bFGF) in idiopathic myelofibrosis: Evidence for a pathogenetic role for extracellular calmodulin

Reilly, JT, Smith, JM, Dalley, A and MacNeil, S (1996). Investigation of calmodulin and basic fibroblast growth factor (bFGF) in idiopathic myelofibrosis: Evidence for a pathogenetic role for extracellular calmodulin. OXFORD: BLACKWELL SCIENCE LTD.